Top 10 genes with highest correlation to Rv3540c/ltp2:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3551/- | (cc=0.7764) | info on Rv3551/- |
| Rv3544c/fadE28 | (cc=0.7616) | info on Rv3544c/fadE28 |
| Rv3870/eccCa1 | (cc=0.7568) | info on Rv3870/eccCa1 |
| Rv3883c/mycP1 | (cc=0.7539) | info on Rv3883c/mycP1 |
| Rv3542c/- | (cc=0.7521) | info on Rv3542c/- |
| Rv3869/eccB1 | (cc=0.7491) | info on Rv3869/eccB1 |
| Rv3535c/hsaG | (cc=0.7415) | info on Rv3535c/hsaG |
| Rv3550/echA20 | (cc=0.7398) | info on Rv3550/echA20 |
| Rv3553/- | (cc=0.7288) | info on Rv3553/- |
| Rv3502c/- | (cc=0.7287) | info on Rv3502c/- |
Correlation of Rv3540c/ltp2 with Rv3551/-
Normalized LFCs for Rv3540c/ltp2:
(description and provenance of datasets)
| Rv3540c/ltp2 | Rv3551/- | |
| Fe_supp_jason_reseq | -0.218 | 0.737 |
| low_pH_jason_reseq | 0.979 | -0.647 |
| NO_jason_reseq | -0.176 | -0.601 |
| B6_jason_reseq | -2.219 | -1.96 |
| MHCII_jason_reseq | -1.719 | -1.726 |
| Isoniazid02 | 2.103 | -0.842 |
| Rifampicin4 | -0.171 | -0.165 |
| Ethambutol3 | 2.831 | -1.515 |
| Meropenem3 | -0.236 | 0.734 |
| Vancomycin16 | -0.618 | -1.008 |
| Rv2680_day32 | 0.0 | -1.788 |
| H37Rv_KO_MarP | -0.169 | 0.246 |
| hypoxia_3wks | -0.132 | 0.08 |
| hypoxia_6wks | -0.069 | -0.693 |
| glycerol | 1.065 | 1.148 |
| cholesterol | -1.761 | -3.657 |
| AJ | -2.82 | -5.857 |
| Bibs02 | -2.223 | -4.616 |
| Bibs02c | -1.97 | -5.282 |
| BL6 | -0.752 | -2.92 |
| BL6a | -2.03 | -5.001 |
| BXD01 | -1.227 | -3.288 |
| BXD010 | -1.107 | -2.306 |
| BXD011 | -0.042 | -2.59 |
| BXD03 | 0.417 | -3.28 |
| BXD04 | -1.38 | -2.999 |
| BXD05 | -1.38 | -3.029 |
| BXD06 | -1.623 | -3.37 |
| BXD07 | -1.197 | -3.496 |
| BXD08 | -1.363 | -3.226 |
| BXD09 | -1.44 | -3.408 |
| CAST | -2.571 | -4.838 |
| CCcont | 0.757 | -0.733 |
| DS01 | -2.871 | -5.963 |
| DS02 | -2.644 | -5.49 |
| DS04 | -1.989 | -4.367 |
| DS0c | -2.637 | -5.476 |
| GP01 | -1.102 | -2.304 |
| GP02 | -0.929 | -1.942 |
| GP0c | 0.785 | -1.016 |
| NOD | -1.351 | -1.847 |
| NZO | -2.425 | -4.838 |
| PWK | -2.384 | -4.757 |
| H37Rv_KO_CtpC | -1.813 | -3.94 |
| H37Rv_KO_CtpD | -1.095 | -2.576 |
| H37Rv_KO_Rv1272 | -1.022 | -3.56 |
| H37Rv_KO_SugABC | -1.106 | -1.783 |
| H37Rv_KO_MbtN | -1.056 | -1.855 |
| Trans05 | -0.512 | -3.299 |
| macrophage_unactivated | -0.83 | 0.66 |
| IL1 | -0.451 | -1.605 |
| Rapamycin | 0.0 | -1.093 |
| Tcell | -3.584 | -2.209 |
| GMCSF | 0.246 | 0.752 |
| IFNab | 2.316 | 2.283 |
| IFNg | 1.013 | -0.249 |
| IFNg_GMCSF1 | -1.405 | -0.606 |
| Rv1432_day32 | -0.18 | -3.863 |
| Rv1565c_day32 | -0.766 | -3.884 |
| secA2_input | 1.249 | -0.54 |
| delta_Rv3594 | -0.225 | -0.26 |
| delta_Rv3717 | 0.37 | 0.191 |
| delta_Rv3811 | 0.437 | 0.556 |
| delta_Rv0954 | 0.652 | 1.149 |
| PonA1 | 0.693 | 0.384 |
| EccD1_KO | 0.635 | 1.246 |
| EspI_KO | 0.918 | 0.539 |
| PE35_KO | 0.292 | 1.105 |
| PPE68_KO | 0.32 | 1.139 |
| glycerol2 | 1.292 | 0.289 |
| lignocerate | 1.628 | 0.785 |
| oleate | -1.117 | -0.537 |
| phosphatidylcholine | 0.854 | -0.106 |
| acetate | 2.068 | 2.234 |
| glucAc | 2.286 | 1.052 |
| Rv0950ko | 0.093 | 1.903 |
| Rv1096ko | 1.3 | 0.329 |
| Rv3684ko | 0.845 | 0.092 |
| delta_otsA_trehalose | 0.327 | 0.325 |