Top 10 genes with highest correlation to Rv3519/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0990c/- | (cc=0.5039) | info on Rv0990c/- |
| Rv3069/- | (cc=0.4877) | info on Rv3069/- |
| Rv2980/- | (cc=0.4589) | info on Rv2980/- |
| Rv2505c/fadD35 | (cc=0.4514) | info on Rv2505c/fadD35 |
| Rv1023/eno | (cc=0.4475) | info on Rv1023/eno |
| Rv1711/- | (cc=0.4393) | info on Rv1711/- |
| Rv1138c/- | (cc=0.4387) | info on Rv1138c/- |
| Rv1939/- | (cc=0.4269) | info on Rv1939/- |
| Rv2052c/- | (cc=0.4125) | info on Rv2052c/- |
| Rv3129/- | (cc=0.4061) | info on Rv3129/- |
Correlation of Rv3519/- with Rv1939/-
Normalized LFCs for Rv3519/-:
(description and provenance of datasets)
| Rv3519/- | Rv1939/- | |
| Fe_supp_jason_reseq | -0.436 | -1.937 |
| low_pH_jason_reseq | 0.03 | 1.032 |
| NO_jason_reseq | 0.803 | 0.383 |
| B6_jason_reseq | 0.639 | -0.487 |
| MHCII_jason_reseq | 0.692 | -0.671 |
| Isoniazid02 | -0.342 | 1.014 |
| Rifampicin4 | 0.466 | 1.097 |
| Ethambutol3 | 0.154 | 0.223 |
| Meropenem3 | -0.535 | 1.052 |
| Vancomycin16 | -0.271 | -0.106 |
| Rv2680_day32 | 0.428 | 1.99 |
| H37Rv_KO_MarP | -0.502 | -0.107 |
| hypoxia_3wks | -0.805 | -0.459 |
| hypoxia_6wks | 0.816 | -1.244 |
| glycerol | 0.295 | -1.309 |
| cholesterol | -0.374 | -0.218 |
| AJ | 0.074 | 0.099 |
| Bibs02 | -0.073 | -2.906 |
| Bibs02c | 0.388 | -1.161 |
| BL6 | -0.12 | -3.238 |
| BL6a | 0.232 | -1.35 |
| BXD01 | -0.449 | -0.888 |
| BXD010 | -0.299 | -3.071 |
| BXD011 | -0.318 | -1.418 |
| BXD03 | -0.455 | -2.669 |
| BXD04 | 0.159 | -1.917 |
| BXD05 | -0.857 | -0.85 |
| BXD06 | 0.195 | -2.122 |
| BXD07 | -0.709 | -2.442 |
| BXD08 | -0.496 | -3.189 |
| BXD09 | 0.063 | -2.695 |
| CAST | -0.576 | 0.232 |
| CCcont | -0.718 | -3.716 |
| DS01 | 0.062 | -1.571 |
| DS02 | 0.378 | -0.739 |
| DS04 | 0.691 | -1.528 |
| DS0c | 0.793 | 0.643 |
| GP01 | 0.505 | -2.556 |
| GP02 | 0.862 | -2.154 |
| GP0c | -0.017 | -2.727 |
| NOD | -1.058 | -1.115 |
| NZO | -1.27 | 0.468 |
| PWK | -0.173 | 0.86 |
| H37Rv_KO_CtpC | -0.392 | -0.901 |
| H37Rv_KO_CtpD | 0.683 | -0.298 |
| H37Rv_KO_Rv1272 | -0.284 | -0.68 |
| H37Rv_KO_SugABC | 0.038 | -0.17 |
| H37Rv_KO_MbtN | 0.915 | 0.312 |
| Trans05 | -0.009 | 0.183 |
| macrophage_unactivated | 0.148 | 2.781 |
| IL1 | 0.833 | 0.0 |
| Rapamycin | 0.583 | -0.491 |
| Tcell | 0.753 | 3.617 |
| GMCSF | 0.333 | 0.729 |
| IFNab | 0.278 | -1.333 |
| IFNg | 0.278 | 0.567 |
| IFNg_GMCSF1 | -0.6 | 1.423 |
| Rv1432_day32 | -0.562 | 0.087 |
| Rv1565c_day32 | 0.441 | 1.309 |
| secA2_input | -0.225 | 2.408 |
| delta_Rv3594 | -0.15 | -2.533 |
| delta_Rv3717 | -0.802 | -0.881 |
| delta_Rv3811 | -0.705 | -0.912 |
| delta_Rv0954 | -0.373 | -1.828 |
| PonA1 | -0.104 | -2.246 |
| EccD1_KO | 1.898 | 2.973 |
| EspI_KO | 2.002 | 3.254 |
| PE35_KO | 1.065 | 1.881 |
| PPE68_KO | 0.982 | 3.257 |
| glycerol2 | -0.383 | -3.357 |
| lignocerate | -0.258 | -2.175 |
| oleate | -0.267 | -1.26 |
| phosphatidylcholine | -0.231 | -1.613 |
| acetate | -0.07 | -1.81 |
| glucAc | -0.363 | -3.434 |
| Rv0950ko | 0.38 | -0.823 |
| Rv1096ko | 1.348 | 1.288 |
| Rv3684ko | -0.236 | -1.877 |
| delta_otsA_trehalose | -0.576 | 0.066 |