Top 10 genes with highest correlation to Rv3519/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0990c/- | (cc=0.5039) | info on Rv0990c/- |
| Rv3069/- | (cc=0.4877) | info on Rv3069/- |
| Rv2980/- | (cc=0.4589) | info on Rv2980/- |
| Rv2505c/fadD35 | (cc=0.4514) | info on Rv2505c/fadD35 |
| Rv1023/eno | (cc=0.4475) | info on Rv1023/eno |
| Rv1711/- | (cc=0.4393) | info on Rv1711/- |
| Rv1138c/- | (cc=0.4387) | info on Rv1138c/- |
| Rv1939/- | (cc=0.4269) | info on Rv1939/- |
| Rv2052c/- | (cc=0.4125) | info on Rv2052c/- |
| Rv3129/- | (cc=0.4061) | info on Rv3129/- |
Correlation of Rv3519/- with Rv0990c/-
Normalized LFCs for Rv3519/-:
(description and provenance of datasets)
| Rv3519/- | Rv0990c/- | |
| Fe_supp_jason_reseq | -0.436 | -1.389 |
| low_pH_jason_reseq | 0.03 | 0.683 |
| NO_jason_reseq | 0.803 | -0.499 |
| B6_jason_reseq | 0.639 | 0.178 |
| MHCII_jason_reseq | 0.692 | 0.942 |
| Isoniazid02 | -0.342 | -0.138 |
| Rifampicin4 | 0.466 | -0.455 |
| Ethambutol3 | 0.154 | 0.315 |
| Meropenem3 | -0.535 | 0.359 |
| Vancomycin16 | -0.271 | -0.066 |
| Rv2680_day32 | 0.428 | -0.444 |
| H37Rv_KO_MarP | -0.502 | -0.179 |
| hypoxia_3wks | -0.805 | -0.514 |
| hypoxia_6wks | 0.816 | -0.963 |
| glycerol | 0.295 | 0.19 |
| cholesterol | -0.374 | -0.302 |
| AJ | 0.074 | 0.459 |
| Bibs02 | -0.073 | -0.261 |
| Bibs02c | 0.388 | -0.605 |
| BL6 | -0.12 | 0.157 |
| BL6a | 0.232 | 0.082 |
| BXD01 | -0.449 | -0.413 |
| BXD010 | -0.299 | 0.199 |
| BXD011 | -0.318 | 0.476 |
| BXD03 | -0.455 | -0.204 |
| BXD04 | 0.159 | -0.837 |
| BXD05 | -0.857 | -0.757 |
| BXD06 | 0.195 | -0.475 |
| BXD07 | -0.709 | -0.338 |
| BXD08 | -0.496 | -0.312 |
| BXD09 | 0.063 | -0.472 |
| CAST | -0.576 | -0.582 |
| CCcont | -0.718 | -0.312 |
| DS01 | 0.062 | 0.311 |
| DS02 | 0.378 | 0.624 |
| DS04 | 0.691 | 0.514 |
| DS0c | 0.793 | 0.679 |
| GP01 | 0.505 | 0.16 |
| GP02 | 0.862 | 0.23 |
| GP0c | -0.017 | 0.479 |
| NOD | -1.058 | 0.225 |
| NZO | -1.27 | 1.087 |
| PWK | -0.173 | 0.014 |
| H37Rv_KO_CtpC | -0.392 | 0.244 |
| H37Rv_KO_CtpD | 0.683 | 0.22 |
| H37Rv_KO_Rv1272 | -0.284 | -0.271 |
| H37Rv_KO_SugABC | 0.038 | 0.403 |
| H37Rv_KO_MbtN | 0.915 | 0.579 |
| Trans05 | -0.009 | 0.947 |
| macrophage_unactivated | 0.148 | 0.06 |
| IL1 | 0.833 | 0.762 |
| Rapamycin | 0.583 | 0.737 |
| Tcell | 0.753 | -0.714 |
| GMCSF | 0.333 | -0.293 |
| IFNab | 0.278 | 0.284 |
| IFNg | 0.278 | 0.102 |
| IFNg_GMCSF1 | -0.6 | -0.06 |
| Rv1432_day32 | -0.562 | -0.227 |
| Rv1565c_day32 | 0.441 | -0.066 |
| secA2_input | -0.225 | -0.285 |
| delta_Rv3594 | -0.15 | -1.386 |
| delta_Rv3717 | -0.802 | -1.475 |
| delta_Rv3811 | -0.705 | -2.195 |
| delta_Rv0954 | -0.373 | -0.282 |
| PonA1 | -0.104 | -0.136 |
| EccD1_KO | 1.898 | 1.901 |
| EspI_KO | 2.002 | 2.935 |
| PE35_KO | 1.065 | 0.974 |
| PPE68_KO | 0.982 | 1.312 |
| glycerol2 | -0.383 | -1.819 |
| lignocerate | -0.258 | -0.437 |
| oleate | -0.267 | -0.486 |
| phosphatidylcholine | -0.231 | -0.916 |
| acetate | -0.07 | 0.06 |
| glucAc | -0.363 | -0.716 |
| Rv0950ko | 0.38 | -0.223 |
| Rv1096ko | 1.348 | -0.362 |
| Rv3684ko | -0.236 | 0.452 |
| delta_otsA_trehalose | -0.576 | -0.111 |