Top 10 genes with highest correlation to Rv3413c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1846c/blaI | (cc=0.6366) | info on Rv1846c/blaI |
| Rv3005c/- | (cc=0.5405) | info on Rv3005c/- |
| Rv3717/- | (cc=0.5143) | info on Rv3717/- |
| Rv0994/moeA1 | (cc=0.5005) | info on Rv0994/moeA1 |
| Rv0406c/- | (cc=0.4952) | info on Rv0406c/- |
| Rv2564/glnQ | (cc=0.4907) | info on Rv2564/glnQ |
| Rv3661/- | (cc=0.4772) | info on Rv3661/- |
| Rv2125/- | (cc=0.4703) | info on Rv2125/- |
| Rv0561c/- | (cc=0.4689) | info on Rv0561c/- |
| Rv2563/- | (cc=0.4586) | info on Rv2563/- |
Correlation of Rv3413c/- with Rv2564/glnQ
Normalized LFCs for Rv3413c/-:
(description and provenance of datasets)
| Rv3413c/- | Rv2564/glnQ | |
| Fe_supp_jason_reseq | -0.227 | 2.013 |
| low_pH_jason_reseq | -1.228 | -0.333 |
| NO_jason_reseq | -0.223 | -1.853 |
| B6_jason_reseq | -1.577 | -1.519 |
| MHCII_jason_reseq | 0.184 | -0.932 |
| Isoniazid02 | 0.045 | 0.036 |
| Rifampicin4 | -1.627 | -2.134 |
| Ethambutol3 | -0.663 | 1.918 |
| Meropenem3 | -1.381 | 0.649 |
| Vancomycin16 | -0.241 | -0.578 |
| Rv2680_day32 | -2.448 | -2.923 |
| H37Rv_KO_MarP | -1.997 | 0.621 |
| hypoxia_3wks | -1.101 | -3.038 |
| hypoxia_6wks | -0.689 | -2.011 |
| glycerol | -1.463 | 0.676 |
| cholesterol | 0.636 | 0.44 |
| AJ | -0.842 | -3.514 |
| Bibs02 | 0.376 | -2.262 |
| Bibs02c | 0.45 | 0.652 |
| BL6 | -2.133 | -2.64 |
| BL6a | 0.033 | -1.086 |
| BXD01 | -2.613 | -3.107 |
| BXD010 | -2.52 | -1.829 |
| BXD011 | -1.682 | -2.911 |
| BXD03 | -0.876 | -1.721 |
| BXD04 | -1.737 | -2.264 |
| BXD05 | -0.901 | -3.076 |
| BXD06 | -2.441 | -2.714 |
| BXD07 | -1.622 | -2.716 |
| BXD08 | -0.919 | -2.704 |
| BXD09 | -1.574 | -3.352 |
| CAST | -2.579 | -0.429 |
| CCcont | -1.116 | 0.355 |
| DS01 | 1.271 | 2.322 |
| DS02 | 1.308 | 0.607 |
| DS04 | -0.483 | 2.805 |
| DS0c | 0.685 | 1.673 |
| GP01 | -0.639 | -2.355 |
| GP02 | -1.205 | -1.985 |
| GP0c | -0.462 | -3.102 |
| NOD | 0.623 | 0.552 |
| NZO | -1.272 | -2.766 |
| PWK | -1.398 | 1.212 |
| H37Rv_KO_CtpC | 1.116 | -0.95 |
| H37Rv_KO_CtpD | -0.742 | -0.764 |
| H37Rv_KO_Rv1272 | -1.022 | -1.846 |
| H37Rv_KO_SugABC | -0.023 | -1.5 |
| H37Rv_KO_MbtN | -1.244 | -1.952 |
| Trans05 | -2.672 | -2.986 |
| macrophage_unactivated | -0.666 | 0.947 |
| IL1 | 0.056 | -1.818 |
| Rapamycin | 0.921 | -0.543 |
| Tcell | -1.492 | 0.0 |
| GMCSF | 1.212 | 0.671 |
| IFNab | 0.529 | 0.163 |
| IFNg | -0.593 | -1.013 |
| IFNg_GMCSF1 | -0.031 | -0.179 |
| Rv1432_day32 | -1.207 | -3.206 |
| Rv1565c_day32 | -0.37 | -0.509 |
| secA2_input | -0.249 | -1.198 |
| delta_Rv3594 | 0.329 | -2.272 |
| delta_Rv3717 | -0.038 | -1.869 |
| delta_Rv3811 | 0.348 | -1.817 |
| delta_Rv0954 | 0.39 | 1.292 |
| PonA1 | 0.314 | 2.505 |
| EccD1_KO | -1.069 | 0.0 |
| EspI_KO | -0.248 | -0.274 |
| PE35_KO | -0.627 | 1.126 |
| PPE68_KO | -0.448 | 0.816 |
| glycerol2 | -0.601 | -1.572 |
| lignocerate | -0.392 | -0.049 |
| oleate | -1.249 | -2.139 |
| phosphatidylcholine | -0.524 | -0.874 |
| acetate | 1.252 | 1.119 |
| glucAc | 0.236 | 0.357 |
| Rv0950ko | 0.748 | 1.414 |
| Rv1096ko | 1.577 | 0.549 |
| Rv3684ko | 0.278 | 0.088 |
| delta_otsA_trehalose | -0.816 | 1.289 |