TnSeqCorr

Top 10 genes with highest correlation to Rv3394c/-:

update plotcorrelationlink to info on gene
Rv3511/PE_PGRS55 (cc=0.5008) info on Rv3511/PE_PGRS55
Rv3514/PE_PGRS57 (cc=0.4562) info on Rv3514/PE_PGRS57
Rv3508/PE_PGRS54 (cc=0.4517) info on Rv3508/PE_PGRS54
Rv2853/PE_PGRS48 (cc=0.4274) info on Rv2853/PE_PGRS48
Rv2431c/PE25 (cc=0.405) info on Rv2431c/PE25
Rv0834c/PE_PGRS14 (cc=0.4013) info on Rv0834c/PE_PGRS14
Rv0142/- (cc=0.3995) info on Rv0142/-
Rv3299c/atsB (cc=0.399) info on Rv3299c/atsB
Rv0858c/dapC (cc=0.3974) info on Rv0858c/dapC
Rv3470c/ilvB2 (cc=0.3907) info on Rv3470c/ilvB2

Correlation of Rv3394c/- with Rv0834c/PE_PGRS14

Normalized LFCs for Rv3394c/-:
(description and provenance of datasets)
Rv3394c/-Rv0834c/PE_PGRS14
Fe_supp_jason_reseq

-0.829

-1.114

low_pH_jason_reseq

1.228

-0.642

NO_jason_reseq

0.591

-0.667

B6_jason_reseq

-1.269

-0.762

MHCII_jason_reseq

-0.58

-0.046

Isoniazid02

-0.339

-0.971

Rifampicin4

0.72

0.723

Ethambutol3

-0.197

-0.4

Meropenem3

0.207

0.016

Vancomycin16

0.0

-0.143

Rv2680_day32

-0.422

-0.488

H37Rv_KO_MarP

0.289

0.138

hypoxia_3wks

0.439

-0.315

hypoxia_6wks

-0.048

-0.403

glycerol

2.058

1.138

cholesterol

1.696

0.609

AJ

1.627

0.37

Bibs02

0.0

0.837

Bibs02c

0.756

1.15

BL6

0.16

0.083

BL6a

0.443

0.502

BXD01

0.029

0.044

BXD010

0.4

0.015

BXD011

0.137

-0.511

BXD03

0.399

0.09

BXD04

0.486

0.056

BXD05

0.373

0.28

BXD06

0.417

-0.233

BXD07

0.232

0.207

BXD08

1.2

0.337

BXD09

0.39

0.182

CAST

0.385

0.153

CCcont

0.677

-0.124

DS01

0.777

-0.648

DS02

0.364

-0.564

DS04

1.147

0.066

DS0c

-0.823

-0.728

GP01

1.305

0.147

GP02

1.89

0.48

GP0c

0.769

0.258

NOD

-0.158

-0.583

NZO

0.446

0.155

PWK

0.0

0.131

H37Rv_KO_CtpC

0.587

0.291

H37Rv_KO_CtpD

0.351

0.58

H37Rv_KO_Rv1272

1.115

0.016

H37Rv_KO_SugABC

0.659

0.578

H37Rv_KO_MbtN

-0.024

0.271

Trans05

1.567

-0.015

macrophage_unactivated

-0.114

0.0

IL1

0.727

-0.492

Rapamycin

-0.055

0.0

Tcell

-0.554

-0.489

GMCSF

0.317

0.037

IFNab

-0.109

-0.408

IFNg

0.406

-0.532

IFNg_GMCSF1

1.09

-0.091

Rv1432_day32

1.112

0.944

Rv1565c_day32

1.887

-0.99

secA2_input

0.269

0.225

delta_Rv3594

-0.078

0.037

delta_Rv3717

0.062

-0.286

delta_Rv3811

0.073

0.21

delta_Rv0954

0.124

-0.081

PonA1

0.329

0.097

EccD1_KO

0.753

-0.122

EspI_KO

-0.322

0.137

PE35_KO

-0.137

-0.184

PPE68_KO

0.099

-0.202

glycerol2

-0.059

0.315

lignocerate

0.499

0.293

oleate

0.274

0.225

phosphatidylcholine

0.296

0.246

acetate

0.733

0.321

glucAc

0.307

0.329

Rv0950ko

0.1

0.6

Rv1096ko

0.473

0.739

Rv3684ko

1.52

0.498

delta_otsA_trehalose

-0.045

-1.604