Top 10 genes with highest correlation to Rv3371/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2917/- | (cc=0.5434) | info on Rv2917/- |
| Rv2831/echA16 | (cc=0.5183) | info on Rv2831/echA16 |
| Rv1657/argR | (cc=0.5146) | info on Rv1657/argR |
| Rv0621/- | (cc=0.5118) | info on Rv0621/- |
| Rv2860c/glnA4 | (cc=0.5112) | info on Rv2860c/glnA4 |
| Rv2784c/lppU | (cc=0.5022) | info on Rv2784c/lppU |
| Rv1075c/- | (cc=0.4887) | info on Rv1075c/- |
| Rv2811/- | (cc=0.4698) | info on Rv2811/- |
| Rv0631c/recC | (cc=0.4669) | info on Rv0631c/recC |
| Rv3445c/esxU | (cc=0.4619) | info on Rv3445c/esxU |
Correlation of Rv3371/- with Rv3445c/esxU
Normalized LFCs for Rv3371/-:
(description and provenance of datasets)
| Rv3371/- | Rv3445c/esxU | |
| Fe_supp_jason_reseq | -0.442 | -0.854 |
| low_pH_jason_reseq | -0.527 | -0.778 |
| NO_jason_reseq | -1.016 | 0.011 |
| B6_jason_reseq | -0.131 | 1.196 |
| MHCII_jason_reseq | 1.576 | 1.337 |
| Isoniazid02 | 1.059 | 0.106 |
| Rifampicin4 | -0.125 | -0.208 |
| Ethambutol3 | 0.518 | 0.054 |
| Meropenem3 | 0.386 | 1.584 |
| Vancomycin16 | 0.451 | -0.061 |
| Rv2680_day32 | -0.074 | -0.72 |
| H37Rv_KO_MarP | -0.151 | -0.801 |
| hypoxia_3wks | 0.159 | -0.379 |
| hypoxia_6wks | 0.125 | -0.205 |
| glycerol | 0.696 | -1.697 |
| cholesterol | 0.55 | -0.468 |
| AJ | 0.881 | -0.069 |
| Bibs02 | 0.587 | 0.633 |
| Bibs02c | 0.033 | 0.33 |
| BL6 | -0.222 | -1.139 |
| BL6a | -0.24 | -0.598 |
| BXD01 | 0.197 | -0.715 |
| BXD010 | -0.887 | -1.243 |
| BXD011 | -0.66 | -0.593 |
| BXD03 | 0.107 | -0.593 |
| BXD04 | 0.152 | -0.114 |
| BXD05 | -0.56 | -1.909 |
| BXD06 | -0.555 | -1.022 |
| BXD07 | -0.329 | -1.357 |
| BXD08 | -0.137 | -0.366 |
| BXD09 | -0.145 | -1.355 |
| CAST | 0.507 | -0.158 |
| CCcont | -0.416 | -1.298 |
| DS01 | 1.15 | 0.956 |
| DS02 | 0.449 | 1.1 |
| DS04 | 1.275 | 0.305 |
| DS0c | 0.448 | 0.544 |
| GP01 | -0.411 | 0.275 |
| GP02 | -0.525 | 0.421 |
| GP0c | -0.573 | 0.528 |
| NOD | 0.21 | -0.83 |
| NZO | 0.0 | -0.335 |
| PWK | 0.483 | -0.033 |
| H37Rv_KO_CtpC | -0.798 | -0.86 |
| H37Rv_KO_CtpD | -2.012 | -3.872 |
| H37Rv_KO_Rv1272 | 0.519 | -3.257 |
| H37Rv_KO_SugABC | -0.084 | -1.838 |
| H37Rv_KO_MbtN | -0.781 | -0.933 |
| Trans05 | -0.905 | -1.718 |
| macrophage_unactivated | 0.537 | 0.379 |
| IL1 | 0.504 | -0.214 |
| Rapamycin | 0.988 | -0.301 |
| Tcell | 0.759 | 0.254 |
| GMCSF | 0.095 | 0.528 |
| IFNab | -0.112 | -0.2 |
| IFNg | 0.187 | -1.053 |
| IFNg_GMCSF1 | 1.191 | 1.109 |
| Rv1432_day32 | -0.598 | 0.567 |
| Rv1565c_day32 | 0.0 | 0.232 |
| secA2_input | 0.866 | 2.519 |
| delta_Rv3594 | 0.728 | 0.0 |
| delta_Rv3717 | 0.482 | -0.189 |
| delta_Rv3811 | 0.091 | -0.335 |
| delta_Rv0954 | 1.031 | 0.758 |
| PonA1 | 1.624 | 0.427 |
| EccD1_KO | 0.0 | 0.47 |
| EspI_KO | 1.081 | 0.747 |
| PE35_KO | 0.0 | 1.158 |
| PPE68_KO | -0.358 | -0.022 |
| glycerol2 | 0.087 | 0.867 |
| lignocerate | -0.1 | 0.96 |
| oleate | 0.665 | 0.988 |
| phosphatidylcholine | 0.21 | 0.81 |
| acetate | -0.495 | 1.335 |
| glucAc | -0.646 | 0.023 |
| Rv0950ko | -0.47 | 1.375 |
| Rv1096ko | 0.217 | 2.576 |
| Rv3684ko | 0.881 | 1.772 |
| delta_otsA_trehalose | -0.512 | -1.792 |