Top 10 genes with highest correlation to Rv3371/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2917/- | (cc=0.5434) | info on Rv2917/- |
| Rv2831/echA16 | (cc=0.5183) | info on Rv2831/echA16 |
| Rv1657/argR | (cc=0.5146) | info on Rv1657/argR |
| Rv0621/- | (cc=0.5118) | info on Rv0621/- |
| Rv2860c/glnA4 | (cc=0.5112) | info on Rv2860c/glnA4 |
| Rv2784c/lppU | (cc=0.5022) | info on Rv2784c/lppU |
| Rv1075c/- | (cc=0.4887) | info on Rv1075c/- |
| Rv2811/- | (cc=0.4698) | info on Rv2811/- |
| Rv0631c/recC | (cc=0.4669) | info on Rv0631c/recC |
| Rv3445c/esxU | (cc=0.4619) | info on Rv3445c/esxU |
Correlation of Rv3371/- with Rv1657/argR
Normalized LFCs for Rv3371/-:
(description and provenance of datasets)
| Rv3371/- | Rv1657/argR | |
| Fe_supp_jason_reseq | -0.442 | -1.639 |
| low_pH_jason_reseq | -0.527 | -2.076 |
| NO_jason_reseq | -1.016 | -1.801 |
| B6_jason_reseq | -0.131 | 0.006 |
| MHCII_jason_reseq | 1.576 | 0.433 |
| Isoniazid02 | 1.059 | 0.969 |
| Rifampicin4 | -0.125 | 0.479 |
| Ethambutol3 | 0.518 | 0.495 |
| Meropenem3 | 0.386 | -0.157 |
| Vancomycin16 | 0.451 | 0.0 |
| Rv2680_day32 | -0.074 | -2.613 |
| H37Rv_KO_MarP | -0.151 | 0.363 |
| hypoxia_3wks | 0.159 | -1.192 |
| hypoxia_6wks | 0.125 | -1.656 |
| glycerol | 0.696 | 1.641 |
| cholesterol | 0.55 | -0.061 |
| AJ | 0.881 | -1.037 |
| Bibs02 | 0.587 | -0.156 |
| Bibs02c | 0.033 | -1.432 |
| BL6 | -0.222 | -2.797 |
| BL6a | -0.24 | -2.043 |
| BXD01 | 0.197 | -2.399 |
| BXD010 | -0.887 | -1.531 |
| BXD011 | -0.66 | -3.232 |
| BXD03 | 0.107 | -2.075 |
| BXD04 | 0.152 | -1.329 |
| BXD05 | -0.56 | -1.63 |
| BXD06 | -0.555 | -2.42 |
| BXD07 | -0.329 | -2.322 |
| BXD08 | -0.137 | -2.3 |
| BXD09 | -0.145 | -3.271 |
| CAST | 0.507 | -0.556 |
| CCcont | -0.416 | -0.936 |
| DS01 | 1.15 | 0.441 |
| DS02 | 0.449 | -0.581 |
| DS04 | 1.275 | 0.476 |
| DS0c | 0.448 | 0.097 |
| GP01 | -0.411 | -0.916 |
| GP02 | -0.525 | -1.791 |
| GP0c | -0.573 | -1.533 |
| NOD | 0.21 | -0.69 |
| NZO | 0.0 | -2.384 |
| PWK | 0.483 | 0.21 |
| H37Rv_KO_CtpC | -0.798 | 0.128 |
| H37Rv_KO_CtpD | -2.012 | -3.369 |
| H37Rv_KO_Rv1272 | 0.519 | -1.829 |
| H37Rv_KO_SugABC | -0.084 | -0.995 |
| H37Rv_KO_MbtN | -0.781 | -1.995 |
| Trans05 | -0.905 | -3.393 |
| macrophage_unactivated | 0.537 | -1.626 |
| IL1 | 0.504 | -0.955 |
| Rapamycin | 0.988 | -1.402 |
| Tcell | 0.759 | -1.307 |
| GMCSF | 0.095 | -2.038 |
| IFNab | -0.112 | -0.357 |
| IFNg | 0.187 | -2.51 |
| IFNg_GMCSF1 | 1.191 | -2.055 |
| Rv1432_day32 | -0.598 | -3.331 |
| Rv1565c_day32 | 0.0 | -0.025 |
| secA2_input | 0.866 | 0.24 |
| delta_Rv3594 | 0.728 | -0.378 |
| delta_Rv3717 | 0.482 | -1.114 |
| delta_Rv3811 | 0.091 | -1.735 |
| delta_Rv0954 | 1.031 | 0.362 |
| PonA1 | 1.624 | -0.268 |
| EccD1_KO | 0.0 | 0.694 |
| EspI_KO | 1.081 | 1.483 |
| PE35_KO | 0.0 | 0.499 |
| PPE68_KO | -0.358 | -0.029 |
| glycerol2 | 0.087 | 0.017 |
| lignocerate | -0.1 | -0.774 |
| oleate | 0.665 | -1.198 |
| phosphatidylcholine | 0.21 | -1.566 |
| acetate | -0.495 | -0.509 |
| glucAc | -0.646 | -0.921 |
| Rv0950ko | -0.47 | -0.787 |
| Rv1096ko | 0.217 | 0.528 |
| Rv3684ko | 0.881 | -0.586 |
| delta_otsA_trehalose | -0.512 | -0.58 |