TnSeqCorr

Top 10 genes with highest correlation to Rv3366/spoU:

update plotcorrelationlink to info on gene
Rv0008c/- (cc=0.6926) info on Rv0008c/-
Rv3295/- (cc=0.6512) info on Rv3295/-
Rv0359/- (cc=0.6507) info on Rv0359/-
Rv0110/- (cc=0.6478) info on Rv0110/-
Rv2638/- (cc=0.6467) info on Rv2638/-
Rv3353c/- (cc=0.6322) info on Rv3353c/-
Rv1834/lipZ (cc=0.6237) info on Rv1834/lipZ
Rv2405/- (cc=0.6165) info on Rv2405/-
Rv0376c/- (cc=0.5989) info on Rv0376c/-
Rv3354/- (cc=0.5923) info on Rv3354/-

Correlation of Rv3366/spoU with Rv0008c/-

Normalized LFCs for Rv3366/spoU:
(description and provenance of datasets)
Rv3366/spoURv0008c/-
Fe_supp_jason_reseq

-1.345

-2.052

low_pH_jason_reseq

-1.36

-0.85

NO_jason_reseq

0.94

1.575

B6_jason_reseq

0.179

2.298

MHCII_jason_reseq

0.919

1.965

Isoniazid02

-0.556

0.56

Rifampicin4

0.793

0.412

Ethambutol3

-0.154

0.27

Meropenem3

0.381

-0.231

Vancomycin16

-0.138

0.979

Rv2680_day32

-0.683

0.0

H37Rv_KO_MarP

1.012

0.113

hypoxia_3wks

-0.463

-0.702

hypoxia_6wks

-0.662

-0.1

glycerol

0.563

0.856

cholesterol

-0.44

0.366

AJ

-0.081

0.449

Bibs02

-0.162

1.347

Bibs02c

-0.142

-0.973

BL6

-0.081

-0.648

BL6a

-1.045

-3.221

BXD01

-1.875

-1.653

BXD010

-1.722

-2.357

BXD011

-1.305

-2.539

BXD03

-1.743

-1.169

BXD04

-1.927

-3.059

BXD05

-0.858

-0.609

BXD06

-1.423

-1.85

BXD07

-2.32

-1.757

BXD08

-0.595

-1.279

BXD09

-1.348

-1.863

CAST

0.317

0.349

CCcont

-1.909

-0.603

DS01

-0.979

0.186

DS02

-0.922

-0.263

DS04

-0.145

1.214

DS0c

-0.94

-0.955

GP01

0.436

0.797

GP02

-1.308

-0.164

GP0c

-0.058

1.374

NOD

-0.358

0.762

NZO

0.377

-0.241

PWK

0.114

0.965

H37Rv_KO_CtpC

-0.02

-0.258

H37Rv_KO_CtpD

-0.065

1.101

H37Rv_KO_Rv1272

-1.386

0.282

H37Rv_KO_SugABC

0.15

0.062

H37Rv_KO_MbtN

-0.681

-1.337

Trans05

-1.305

-1.893

macrophage_unactivated

-1.944

-0.83

IL1

-2.115

-1.978

Rapamycin

-3.637

-0.43

Tcell

-1.522

-2.923

GMCSF

-1.426

-1.993

IFNab

-2.582

-2.283

IFNg

-2.138

-3.127

IFNg_GMCSF1

-1.335

-1.034

Rv1432_day32

-0.014

0.755

Rv1565c_day32

0.916

0.0

secA2_input

-0.833

-2.232

delta_Rv3594

-2.145

0.601

delta_Rv3717

-0.545

1.058

delta_Rv3811

-0.568

-1.393

delta_Rv0954

-1.344

-0.368

PonA1

-0.68

0.12

EccD1_KO

-0.355

-0.362

EspI_KO

0.433

-0.893

PE35_KO

-1.811

-0.248

PPE68_KO

-2.358

0.362

glycerol2

1.319

2.742

lignocerate

1.128

3.004

oleate

-0.457

0.788

phosphatidylcholine

1.297

2.22

acetate

1.215

4.201

glucAc

1.557

2.715

Rv0950ko

1.963

1.158

Rv1096ko

1.215

1.583

Rv3684ko

2.227

2.103

delta_otsA_trehalose

-1.723

0.711