Top 10 genes with highest correlation to Rv3353c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0008c/- | (cc=0.727) | info on Rv0008c/- |
| Rv0278c/PE_PGRS3 | (cc=0.7017) | info on Rv0278c/PE_PGRS3 |
| Rv2426c/- | (cc=0.6969) | info on Rv2426c/- |
| Rv2657c/- | (cc=0.6947) | info on Rv2657c/- |
| Rv1160/mutT2 | (cc=0.6899) | info on Rv1160/mutT2 |
| Rv3705A/- | (cc=0.6744) | info on Rv3705A/- |
| Rv0887c/- | (cc=0.6722) | info on Rv0887c/- |
| Rv2638/- | (cc=0.6628) | info on Rv2638/- |
| Rv3395c/- | (cc=0.6564) | info on Rv3395c/- |
| Rv2499c/- | (cc=0.6468) | info on Rv2499c/- |
Correlation of Rv3353c/- with Rv3395c/-
Normalized LFCs for Rv3353c/-:
(description and provenance of datasets)
| Rv3353c/- | Rv3395c/- | |
| Fe_supp_jason_reseq | -0.717 | 0.38 |
| low_pH_jason_reseq | -0.11 | 0.142 |
| NO_jason_reseq | -0.278 | 1.496 |
| B6_jason_reseq | 0.221 | 2.279 |
| MHCII_jason_reseq | 1.201 | 2.468 |
| Isoniazid02 | -0.202 | 2.949 |
| Rifampicin4 | -0.376 | 1.776 |
| Ethambutol3 | -0.405 | 2.824 |
| Meropenem3 | -0.026 | 0.666 |
| Vancomycin16 | 0.172 | 0.83 |
| Rv2680_day32 | -1.07 | -0.131 |
| H37Rv_KO_MarP | 0.638 | 0.207 |
| hypoxia_3wks | -0.478 | -1.463 |
| hypoxia_6wks | -1.063 | -1.685 |
| glycerol | 0.846 | 1.328 |
| cholesterol | 0.675 | -0.104 |
| AJ | 0.62 | 0.723 |
| Bibs02 | 0.603 | -1.807 |
| Bibs02c | -0.582 | -0.13 |
| BL6 | -0.568 | -1.264 |
| BL6a | -0.494 | -0.217 |
| BXD01 | -1.238 | -1.377 |
| BXD010 | -2.853 | -1.699 |
| BXD011 | -0.857 | -1.44 |
| BXD03 | -0.144 | -2.616 |
| BXD04 | -1.562 | -1.368 |
| BXD05 | -1.466 | -1.745 |
| BXD06 | -1.137 | -2.2 |
| BXD07 | -1.715 | -3.021 |
| BXD08 | -1.122 | 1.085 |
| BXD09 | -1.577 | -2.15 |
| CAST | 0.127 | 0.02 |
| CCcont | -0.098 | -0.876 |
| DS01 | -0.137 | -0.303 |
| DS02 | -0.471 | 0.214 |
| DS04 | 0.793 | 0.0 |
| DS0c | -0.572 | 0.231 |
| GP01 | -0.708 | -1.669 |
| GP02 | 0.932 | -1.61 |
| GP0c | -2.083 | -0.931 |
| NOD | 0.848 | -0.971 |
| NZO | 0.533 | -0.218 |
| PWK | 0.443 | 0.871 |
| H37Rv_KO_CtpC | 0.684 | -3.435 |
| H37Rv_KO_CtpD | 0.211 | -2.598 |
| H37Rv_KO_Rv1272 | -0.093 | 1.022 |
| H37Rv_KO_SugABC | -2.271 | -1.973 |
| H37Rv_KO_MbtN | -1.938 | -1.836 |
| Trans05 | -0.616 | -0.045 |
| macrophage_unactivated | -1.218 | -3.857 |
| IL1 | -3.1 | -4.405 |
| Rapamycin | -1.553 | -3.069 |
| Tcell | -1.548 | -2.255 |
| GMCSF | -1.45 | -2.64 |
| IFNab | -3.205 | -0.553 |
| IFNg | -4.196 | -1.849 |
| IFNg_GMCSF1 | -0.591 | -1.524 |
| Rv1432_day32 | 0.0 | -0.142 |
| Rv1565c_day32 | -0.504 | -2.088 |
| secA2_input | -0.712 | 1.108 |
| delta_Rv3594 | -0.595 | 2.877 |
| delta_Rv3717 | 0.132 | 3.361 |
| delta_Rv3811 | 0.8 | 1.988 |
| delta_Rv0954 | 1.271 | 2.113 |
| PonA1 | 1.024 | 2.765 |
| EccD1_KO | 0.358 | -0.296 |
| EspI_KO | -0.471 | -1.335 |
| PE35_KO | -0.866 | -1.508 |
| PPE68_KO | -0.682 | -1.129 |
| glycerol2 | 2.969 | 3.254 |
| lignocerate | 3.989 | 3.841 |
| oleate | -1.691 | 0.0 |
| phosphatidylcholine | 2.968 | 3.408 |
| acetate | 3.361 | 5.243 |
| glucAc | 2.601 | 3.947 |
| Rv0950ko | -0.826 | -0.344 |
| Rv1096ko | 0.905 | 0.268 |
| Rv3684ko | 2.112 | 0.4 |
| delta_otsA_trehalose | -0.27 | -0.408 |