Top 10 genes with highest correlation to Rv3353c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0008c/- | (cc=0.727) | info on Rv0008c/- |
| Rv0278c/PE_PGRS3 | (cc=0.7017) | info on Rv0278c/PE_PGRS3 |
| Rv2426c/- | (cc=0.6969) | info on Rv2426c/- |
| Rv2657c/- | (cc=0.6947) | info on Rv2657c/- |
| Rv1160/mutT2 | (cc=0.6899) | info on Rv1160/mutT2 |
| Rv3705A/- | (cc=0.6744) | info on Rv3705A/- |
| Rv0887c/- | (cc=0.6722) | info on Rv0887c/- |
| Rv2638/- | (cc=0.6628) | info on Rv2638/- |
| Rv3395c/- | (cc=0.6564) | info on Rv3395c/- |
| Rv2499c/- | (cc=0.6468) | info on Rv2499c/- |
Correlation of Rv3353c/- with Rv0278c/PE_PGRS3
Normalized LFCs for Rv3353c/-:
(description and provenance of datasets)
| Rv3353c/- | Rv0278c/PE_PGRS3 | |
| Fe_supp_jason_reseq | -0.717 | -0.425 |
| low_pH_jason_reseq | -0.11 | -0.853 |
| NO_jason_reseq | -0.278 | -0.249 |
| B6_jason_reseq | 0.221 | -0.18 |
| MHCII_jason_reseq | 1.201 | 0.931 |
| Isoniazid02 | -0.202 | -0.119 |
| Rifampicin4 | -0.376 | 0.412 |
| Ethambutol3 | -0.405 | 0.711 |
| Meropenem3 | -0.026 | 1.444 |
| Vancomycin16 | 0.172 | 0.0 |
| Rv2680_day32 | -1.07 | 0.83 |
| H37Rv_KO_MarP | 0.638 | 0.416 |
| hypoxia_3wks | -0.478 | -0.427 |
| hypoxia_6wks | -1.063 | -0.223 |
| glycerol | 0.846 | 1.118 |
| cholesterol | 0.675 | 1.118 |
| AJ | 0.62 | 0.341 |
| Bibs02 | 0.603 | 1.095 |
| Bibs02c | -0.582 | 0.041 |
| BL6 | -0.568 | -0.701 |
| BL6a | -0.494 | -1.045 |
| BXD01 | -1.238 | -0.192 |
| BXD010 | -2.853 | -0.594 |
| BXD011 | -0.857 | -0.553 |
| BXD03 | -0.144 | -0.902 |
| BXD04 | -1.562 | -1.024 |
| BXD05 | -1.466 | -0.544 |
| BXD06 | -1.137 | -1.105 |
| BXD07 | -1.715 | -0.269 |
| BXD08 | -1.122 | -0.197 |
| BXD09 | -1.577 | -0.342 |
| CAST | 0.127 | -0.045 |
| CCcont | -0.098 | -0.122 |
| DS01 | -0.137 | -0.144 |
| DS02 | -0.471 | 0.759 |
| DS04 | 0.793 | 0.382 |
| DS0c | -0.572 | -0.178 |
| GP01 | -0.708 | 0.852 |
| GP02 | 0.932 | 0.732 |
| GP0c | -2.083 | 0.169 |
| NOD | 0.848 | -0.602 |
| NZO | 0.533 | -0.039 |
| PWK | 0.443 | 0.185 |
| H37Rv_KO_CtpC | 0.684 | -0.705 |
| H37Rv_KO_CtpD | 0.211 | -0.077 |
| H37Rv_KO_Rv1272 | -0.093 | 0.081 |
| H37Rv_KO_SugABC | -2.271 | 0.146 |
| H37Rv_KO_MbtN | -1.938 | -0.578 |
| Trans05 | -0.616 | 0.723 |
| macrophage_unactivated | -1.218 | -0.211 |
| IL1 | -3.1 | -1.783 |
| Rapamycin | -1.553 | -1.013 |
| Tcell | -1.548 | -1.075 |
| GMCSF | -1.45 | -0.982 |
| IFNab | -3.205 | -0.998 |
| IFNg | -4.196 | -0.882 |
| IFNg_GMCSF1 | -0.591 | -0.211 |
| Rv1432_day32 | 0.0 | 0.24 |
| Rv1565c_day32 | -0.504 | -0.622 |
| secA2_input | -0.712 | -0.028 |
| delta_Rv3594 | -0.595 | 0.02 |
| delta_Rv3717 | 0.132 | 0.156 |
| delta_Rv3811 | 0.8 | -0.498 |
| delta_Rv0954 | 1.271 | -0.634 |
| PonA1 | 1.024 | 0.479 |
| EccD1_KO | 0.358 | 0.095 |
| EspI_KO | -0.471 | 0.442 |
| PE35_KO | -0.866 | 0.213 |
| PPE68_KO | -0.682 | 0.234 |
| glycerol2 | 2.969 | 2.123 |
| lignocerate | 3.989 | 2.776 |
| oleate | -1.691 | 0.0 |
| phosphatidylcholine | 2.968 | 2.122 |
| acetate | 3.361 | 3.238 |
| glucAc | 2.601 | 2.725 |
| Rv0950ko | -0.826 | 0.0 |
| Rv1096ko | 0.905 | 0.247 |
| Rv3684ko | 2.112 | -0.111 |
| delta_otsA_trehalose | -0.27 | -1.199 |