Top 10 genes with highest correlation to Rv3334/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1897c/- | (cc=0.4902) | info on Rv1897c/- |
| Rv0557/mgtA | (cc=0.4376) | info on Rv0557/mgtA |
| Rv1055/- | (cc=0.4336) | info on Rv1055/- |
| Rv1687c/- | (cc=0.4229) | info on Rv1687c/- |
| Rv3017c/esxQ | (cc=0.4205) | info on Rv3017c/esxQ |
| Rv1936/- | (cc=0.4147) | info on Rv1936/- |
| Rv0377/- | (cc=0.4069) | info on Rv0377/- |
| Rv2290/lppO | (cc=0.3888) | info on Rv2290/lppO |
| Rv2811/- | (cc=0.3828) | info on Rv2811/- |
| Rv3069/- | (cc=0.3823) | info on Rv3069/- |
Correlation of Rv3334/- with Rv1055/-
Normalized LFCs for Rv3334/-:
(description and provenance of datasets)
| Rv3334/- | Rv1055/- | |
| Fe_supp_jason_reseq | 0.346 | -1.255 |
| low_pH_jason_reseq | 0.535 | 0.579 |
| NO_jason_reseq | 0.202 | 0.063 |
| B6_jason_reseq | 0.019 | 1.11 |
| MHCII_jason_reseq | 0.075 | -2.503 |
| Isoniazid02 | 0.374 | 0.444 |
| Rifampicin4 | 0.027 | -1.362 |
| Ethambutol3 | -0.161 | -0.22 |
| Meropenem3 | 0.134 | -0.464 |
| Vancomycin16 | 0.345 | 0.218 |
| Rv2680_day32 | -2.671 | -2.73 |
| H37Rv_KO_MarP | 1.031 | 2.069 |
| hypoxia_3wks | 0.762 | 0.678 |
| hypoxia_6wks | -0.443 | 0.269 |
| glycerol | -1.295 | -1.204 |
| cholesterol | -0.753 | 0.324 |
| AJ | 0.254 | 0.477 |
| Bibs02 | 0.785 | -1.325 |
| Bibs02c | -0.809 | -0.252 |
| BL6 | -0.059 | -1.995 |
| BL6a | -0.057 | 0.172 |
| BXD01 | 0.115 | -2.078 |
| BXD010 | 0.309 | -1.799 |
| BXD011 | 0.325 | -0.059 |
| BXD03 | 0.038 | 1.511 |
| BXD04 | -0.014 | -1.537 |
| BXD05 | 0.112 | -1.32 |
| BXD06 | -0.272 | -0.422 |
| BXD07 | 0.309 | -1.529 |
| BXD08 | -0.224 | -1.653 |
| BXD09 | -0.19 | -0.783 |
| CAST | 0.556 | 0.474 |
| CCcont | -0.736 | -2.382 |
| DS01 | 0.548 | 1.456 |
| DS02 | -0.551 | -0.558 |
| DS04 | 0.572 | 0.249 |
| DS0c | 0.074 | 1.496 |
| GP01 | 0.098 | 0.448 |
| GP02 | 0.074 | -0.919 |
| GP0c | -1.215 | 0.882 |
| NOD | 1.902 | 0.918 |
| NZO | 0.25 | -1.035 |
| PWK | 0.894 | -1.512 |
| H37Rv_KO_CtpC | -0.712 | -2.019 |
| H37Rv_KO_CtpD | -1.507 | -1.673 |
| H37Rv_KO_Rv1272 | 0.268 | -1.652 |
| H37Rv_KO_SugABC | -0.624 | -1.308 |
| H37Rv_KO_MbtN | -0.181 | -1.541 |
| Trans05 | 0.516 | 2.805 |
| macrophage_unactivated | -0.107 | -2.396 |
| IL1 | -0.074 | 2.225 |
| Rapamycin | 0.681 | 4.996 |
| Tcell | 0.212 | 1.763 |
| GMCSF | 0.771 | 2.891 |
| IFNab | 0.29 | -0.417 |
| IFNg | 0.575 | 0.644 |
| IFNg_GMCSF1 | 1.625 | 1.973 |
| Rv1432_day32 | -1.454 | 0.0 |
| Rv1565c_day32 | 1.042 | 0.0 |
| secA2_input | -1.586 | -3.496 |
| delta_Rv3594 | 0.514 | 4.061 |
| delta_Rv3717 | 0.49 | 3.989 |
| delta_Rv3811 | 0.416 | 1.139 |
| delta_Rv0954 | 0.525 | 4.679 |
| PonA1 | 0.187 | 0.675 |
| EccD1_KO | 1.266 | 1.204 |
| EspI_KO | 1.169 | 0.265 |
| PE35_KO | 0.391 | -1.435 |
| PPE68_KO | 0.333 | -0.429 |
| glycerol2 | -0.307 | -1.684 |
| lignocerate | -1.102 | -1.464 |
| oleate | 0.347 | -1.704 |
| phosphatidylcholine | 1.318 | -1.683 |
| acetate | -1.77 | -1.998 |
| glucAc | -2.307 | -1.242 |
| Rv0950ko | 0.238 | 3.706 |
| Rv1096ko | 0.317 | 3.706 |
| Rv3684ko | 0.147 | 0.0 |
| delta_otsA_trehalose | 1.149 | 0.699 |