Top 10 genes with highest correlation to Rv3334/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1897c/- | (cc=0.4902) | info on Rv1897c/- |
| Rv0557/mgtA | (cc=0.4376) | info on Rv0557/mgtA |
| Rv1055/- | (cc=0.4336) | info on Rv1055/- |
| Rv1687c/- | (cc=0.4229) | info on Rv1687c/- |
| Rv3017c/esxQ | (cc=0.4205) | info on Rv3017c/esxQ |
| Rv1936/- | (cc=0.4147) | info on Rv1936/- |
| Rv0377/- | (cc=0.4069) | info on Rv0377/- |
| Rv2290/lppO | (cc=0.3888) | info on Rv2290/lppO |
| Rv2811/- | (cc=0.3828) | info on Rv2811/- |
| Rv3069/- | (cc=0.3823) | info on Rv3069/- |
Correlation of Rv3334/- with Rv0377/-
Normalized LFCs for Rv3334/-:
(description and provenance of datasets)
| Rv3334/- | Rv0377/- | |
| Fe_supp_jason_reseq | 0.346 | -0.655 |
| low_pH_jason_reseq | 0.535 | -0.893 |
| NO_jason_reseq | 0.202 | 1.189 |
| B6_jason_reseq | 0.019 | 0.636 |
| MHCII_jason_reseq | 0.075 | 0.217 |
| Isoniazid02 | 0.374 | 0.451 |
| Rifampicin4 | 0.027 | 0.368 |
| Ethambutol3 | -0.161 | 0.396 |
| Meropenem3 | 0.134 | 0.503 |
| Vancomycin16 | 0.345 | 0.26 |
| Rv2680_day32 | -2.671 | -0.642 |
| H37Rv_KO_MarP | 1.031 | 0.746 |
| hypoxia_3wks | 0.762 | -0.694 |
| hypoxia_6wks | -0.443 | -0.821 |
| glycerol | -1.295 | -1.173 |
| cholesterol | -0.753 | 0.323 |
| AJ | 0.254 | 0.148 |
| Bibs02 | 0.785 | 1.06 |
| Bibs02c | -0.809 | 0.441 |
| BL6 | -0.059 | -1.4 |
| BL6a | -0.057 | -0.346 |
| BXD01 | 0.115 | -1.205 |
| BXD010 | 0.309 | -0.352 |
| BXD011 | 0.325 | -1.696 |
| BXD03 | 0.038 | -1.01 |
| BXD04 | -0.014 | -0.584 |
| BXD05 | 0.112 | -0.258 |
| BXD06 | -0.272 | -1.058 |
| BXD07 | 0.309 | -1.844 |
| BXD08 | -0.224 | -1.162 |
| BXD09 | -0.19 | -0.713 |
| CAST | 0.556 | -0.766 |
| CCcont | -0.736 | -2.602 |
| DS01 | 0.548 | 0.541 |
| DS02 | -0.551 | -0.098 |
| DS04 | 0.572 | 0.649 |
| DS0c | 0.074 | 0.859 |
| GP01 | 0.098 | -1.265 |
| GP02 | 0.074 | -2.155 |
| GP0c | -1.215 | -2.122 |
| NOD | 1.902 | -0.205 |
| NZO | 0.25 | -1.29 |
| PWK | 0.894 | -0.342 |
| H37Rv_KO_CtpC | -0.712 | -1.392 |
| H37Rv_KO_CtpD | -1.507 | -1.364 |
| H37Rv_KO_Rv1272 | 0.268 | -1.256 |
| H37Rv_KO_SugABC | -0.624 | 0.456 |
| H37Rv_KO_MbtN | -0.181 | -1.836 |
| Trans05 | 0.516 | -2.179 |
| macrophage_unactivated | -0.107 | -0.36 |
| IL1 | -0.074 | 0.789 |
| Rapamycin | 0.681 | -1.522 |
| Tcell | 0.212 | -0.635 |
| GMCSF | 0.771 | -0.459 |
| IFNab | 0.29 | -0.112 |
| IFNg | 0.575 | -0.358 |
| IFNg_GMCSF1 | 1.625 | 0.883 |
| Rv1432_day32 | -1.454 | 0.0 |
| Rv1565c_day32 | 1.042 | 2.132 |
| secA2_input | -1.586 | -0.861 |
| delta_Rv3594 | 0.514 | 1.456 |
| delta_Rv3717 | 0.49 | 0.452 |
| delta_Rv3811 | 0.416 | 1.533 |
| delta_Rv0954 | 0.525 | 1.591 |
| PonA1 | 0.187 | 1.08 |
| EccD1_KO | 1.266 | -0.171 |
| EspI_KO | 1.169 | 2.387 |
| PE35_KO | 0.391 | 1.552 |
| PPE68_KO | 0.333 | 0.688 |
| glycerol2 | -0.307 | -2.626 |
| lignocerate | -1.102 | -1.671 |
| oleate | 0.347 | -0.784 |
| phosphatidylcholine | 1.318 | -1.863 |
| acetate | -1.77 | -1.662 |
| glucAc | -2.307 | -2.542 |
| Rv0950ko | 0.238 | 1.517 |
| Rv1096ko | 0.317 | 0.971 |
| Rv3684ko | 0.147 | 1.055 |
| delta_otsA_trehalose | 1.149 | 1.917 |