Top 10 genes with highest correlation to Rv3316/sdhC:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3317/sdhD | (cc=0.6555) | info on Rv3317/sdhD |
| Rv3319/sdhB | (cc=0.6133) | info on Rv3319/sdhB |
| Rv2052c/- | (cc=0.5865) | info on Rv2052c/- |
| Rv2772c/- | (cc=0.5751) | info on Rv2772c/- |
| Rv0487/- | (cc=0.5096) | info on Rv0487/- |
| Rv3318/sdhA | (cc=0.5079) | info on Rv3318/sdhA |
| Rv3412/- | (cc=0.4943) | info on Rv3412/- |
| Rv0234c/gabD1 | (cc=0.4771) | info on Rv0234c/gabD1 |
| Rv1939/- | (cc=0.4533) | info on Rv1939/- |
| Rv3057c/- | (cc=0.4438) | info on Rv3057c/- |
Correlation of Rv3316/sdhC with Rv3412/-
Normalized LFCs for Rv3316/sdhC:
(description and provenance of datasets)
| Rv3316/sdhC | Rv3412/- | |
| Fe_supp_jason_reseq | -1.506 | 0.838 |
| low_pH_jason_reseq | 2.392 | 1.081 |
| NO_jason_reseq | 4.038 | -0.108 |
| B6_jason_reseq | -0.387 | -1.998 |
| MHCII_jason_reseq | -2.065 | -1.671 |
| Isoniazid02 | 0.902 | 0.592 |
| Rifampicin4 | 0.081 | -0.588 |
| Ethambutol3 | 1.332 | 1.206 |
| Meropenem3 | 0.569 | 0.295 |
| Vancomycin16 | 0.663 | -0.135 |
| Rv2680_day32 | -1.599 | -2.934 |
| H37Rv_KO_MarP | -2.664 | -0.181 |
| hypoxia_3wks | -0.072 | 0.088 |
| hypoxia_6wks | -0.196 | -0.096 |
| glycerol | 0.424 | 0.527 |
| cholesterol | -0.249 | 1.303 |
| AJ | -0.333 | -0.634 |
| Bibs02 | -0.882 | -1.037 |
| Bibs02c | -3.428 | 0.17 |
| BL6 | -1.665 | -1.056 |
| BL6a | -2.469 | -0.984 |
| BXD01 | -1.372 | -1.184 |
| BXD010 | -0.973 | -1.081 |
| BXD011 | -1.077 | -1.247 |
| BXD03 | -2.461 | -0.273 |
| BXD04 | -1.914 | -0.25 |
| BXD05 | -0.995 | -0.078 |
| BXD06 | -1.22 | -1.085 |
| BXD07 | -2.481 | -1.259 |
| BXD08 | -2.497 | -1.351 |
| BXD09 | -0.645 | -1.231 |
| CAST | -0.317 | 1.143 |
| CCcont | -0.868 | 0.856 |
| DS01 | -1.477 | 0.253 |
| DS02 | 0.011 | 0.205 |
| DS04 | 0.741 | 0.528 |
| DS0c | -0.585 | 0.793 |
| GP01 | -2.333 | -1.647 |
| GP02 | -2.569 | -1.741 |
| GP0c | -2.794 | -2.471 |
| NOD | -1.923 | -0.233 |
| NZO | -0.87 | -1.39 |
| PWK | 1.118 | 0.027 |
| H37Rv_KO_CtpC | -0.546 | -1.984 |
| H37Rv_KO_CtpD | 0.225 | -0.131 |
| H37Rv_KO_Rv1272 | -1.903 | -1.432 |
| H37Rv_KO_SugABC | -0.954 | -1.044 |
| H37Rv_KO_MbtN | -1.618 | -1.465 |
| Trans05 | -1.74 | -0.649 |
| macrophage_unactivated | 0.23 | 0.085 |
| IL1 | -0.386 | -0.62 |
| Rapamycin | -0.485 | -0.841 |
| Tcell | 2.561 | 1.261 |
| GMCSF | 2.368 | -0.552 |
| IFNab | -1.01 | -0.535 |
| IFNg | 0.992 | -1.526 |
| IFNg_GMCSF1 | 1.166 | -0.361 |
| Rv1432_day32 | -1.996 | -2.443 |
| Rv1565c_day32 | -1.786 | -1.344 |
| secA2_input | 0.276 | -0.017 |
| delta_Rv3594 | -2.486 | -1.989 |
| delta_Rv3717 | -3.228 | -3.63 |
| delta_Rv3811 | -2.107 | -2.057 |
| delta_Rv0954 | -1.001 | 0.742 |
| PonA1 | -0.364 | 0.934 |
| EccD1_KO | -0.243 | 0.783 |
| EspI_KO | -0.724 | -0.125 |
| PE35_KO | -0.866 | 0.123 |
| PPE68_KO | -0.147 | 0.582 |
| glycerol2 | -1.892 | -2.494 |
| lignocerate | -0.669 | -2.288 |
| oleate | -2.121 | -0.649 |
| phosphatidylcholine | -0.59 | -2.781 |
| acetate | 0.352 | -0.489 |
| glucAc | 0.227 | 0.057 |
| Rv0950ko | 0.874 | 0.742 |
| Rv1096ko | 0.03 | 0.0 |
| Rv3684ko | -0.707 | -0.262 |
| delta_otsA_trehalose | 2.171 | -0.825 |