Top 10 genes with highest correlation to Rv3316/sdhC:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3317/sdhD | (cc=0.6555) | info on Rv3317/sdhD |
| Rv3319/sdhB | (cc=0.6133) | info on Rv3319/sdhB |
| Rv2052c/- | (cc=0.5865) | info on Rv2052c/- |
| Rv2772c/- | (cc=0.5751) | info on Rv2772c/- |
| Rv0487/- | (cc=0.5096) | info on Rv0487/- |
| Rv3318/sdhA | (cc=0.5079) | info on Rv3318/sdhA |
| Rv3412/- | (cc=0.4943) | info on Rv3412/- |
| Rv0234c/gabD1 | (cc=0.4771) | info on Rv0234c/gabD1 |
| Rv1939/- | (cc=0.4533) | info on Rv1939/- |
| Rv3057c/- | (cc=0.4438) | info on Rv3057c/- |
Correlation of Rv3316/sdhC with Rv1939/-
Normalized LFCs for Rv3316/sdhC:
(description and provenance of datasets)
| Rv3316/sdhC | Rv1939/- | |
| Fe_supp_jason_reseq | -1.506 | -1.937 |
| low_pH_jason_reseq | 2.392 | 1.032 |
| NO_jason_reseq | 4.038 | 0.383 |
| B6_jason_reseq | -0.387 | -0.487 |
| MHCII_jason_reseq | -2.065 | -0.671 |
| Isoniazid02 | 0.902 | 1.014 |
| Rifampicin4 | 0.081 | 1.097 |
| Ethambutol3 | 1.332 | 0.223 |
| Meropenem3 | 0.569 | 1.052 |
| Vancomycin16 | 0.663 | -0.106 |
| Rv2680_day32 | -1.599 | 1.99 |
| H37Rv_KO_MarP | -2.664 | -0.107 |
| hypoxia_3wks | -0.072 | -0.459 |
| hypoxia_6wks | -0.196 | -1.244 |
| glycerol | 0.424 | -1.309 |
| cholesterol | -0.249 | -0.218 |
| AJ | -0.333 | 0.099 |
| Bibs02 | -0.882 | -2.906 |
| Bibs02c | -3.428 | -1.161 |
| BL6 | -1.665 | -3.238 |
| BL6a | -2.469 | -1.35 |
| BXD01 | -1.372 | -0.888 |
| BXD010 | -0.973 | -3.071 |
| BXD011 | -1.077 | -1.418 |
| BXD03 | -2.461 | -2.669 |
| BXD04 | -1.914 | -1.917 |
| BXD05 | -0.995 | -0.85 |
| BXD06 | -1.22 | -2.122 |
| BXD07 | -2.481 | -2.442 |
| BXD08 | -2.497 | -3.189 |
| BXD09 | -0.645 | -2.695 |
| CAST | -0.317 | 0.232 |
| CCcont | -0.868 | -3.716 |
| DS01 | -1.477 | -1.571 |
| DS02 | 0.011 | -0.739 |
| DS04 | 0.741 | -1.528 |
| DS0c | -0.585 | 0.643 |
| GP01 | -2.333 | -2.556 |
| GP02 | -2.569 | -2.154 |
| GP0c | -2.794 | -2.727 |
| NOD | -1.923 | -1.115 |
| NZO | -0.87 | 0.468 |
| PWK | 1.118 | 0.86 |
| H37Rv_KO_CtpC | -0.546 | -0.901 |
| H37Rv_KO_CtpD | 0.225 | -0.298 |
| H37Rv_KO_Rv1272 | -1.903 | -0.68 |
| H37Rv_KO_SugABC | -0.954 | -0.17 |
| H37Rv_KO_MbtN | -1.618 | 0.312 |
| Trans05 | -1.74 | 0.183 |
| macrophage_unactivated | 0.23 | 2.781 |
| IL1 | -0.386 | 0.0 |
| Rapamycin | -0.485 | -0.491 |
| Tcell | 2.561 | 3.617 |
| GMCSF | 2.368 | 0.729 |
| IFNab | -1.01 | -1.333 |
| IFNg | 0.992 | 0.567 |
| IFNg_GMCSF1 | 1.166 | 1.423 |
| Rv1432_day32 | -1.996 | 0.087 |
| Rv1565c_day32 | -1.786 | 1.309 |
| secA2_input | 0.276 | 2.408 |
| delta_Rv3594 | -2.486 | -2.533 |
| delta_Rv3717 | -3.228 | -0.881 |
| delta_Rv3811 | -2.107 | -0.912 |
| delta_Rv0954 | -1.001 | -1.828 |
| PonA1 | -0.364 | -2.246 |
| EccD1_KO | -0.243 | 2.973 |
| EspI_KO | -0.724 | 3.254 |
| PE35_KO | -0.866 | 1.881 |
| PPE68_KO | -0.147 | 3.257 |
| glycerol2 | -1.892 | -3.357 |
| lignocerate | -0.669 | -2.175 |
| oleate | -2.121 | -1.26 |
| phosphatidylcholine | -0.59 | -1.613 |
| acetate | 0.352 | -1.81 |
| glucAc | 0.227 | -3.434 |
| Rv0950ko | 0.874 | -0.823 |
| Rv1096ko | 0.03 | 1.288 |
| Rv3684ko | -0.707 | -1.877 |
| delta_otsA_trehalose | 2.171 | 0.066 |