Top 10 genes with highest correlation to Rv3316/sdhC:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3317/sdhD | (cc=0.6555) | info on Rv3317/sdhD |
| Rv3319/sdhB | (cc=0.6133) | info on Rv3319/sdhB |
| Rv2052c/- | (cc=0.5865) | info on Rv2052c/- |
| Rv2772c/- | (cc=0.5751) | info on Rv2772c/- |
| Rv0487/- | (cc=0.5096) | info on Rv0487/- |
| Rv3318/sdhA | (cc=0.5079) | info on Rv3318/sdhA |
| Rv3412/- | (cc=0.4943) | info on Rv3412/- |
| Rv0234c/gabD1 | (cc=0.4771) | info on Rv0234c/gabD1 |
| Rv1939/- | (cc=0.4533) | info on Rv1939/- |
| Rv3057c/- | (cc=0.4438) | info on Rv3057c/- |
Correlation of Rv3316/sdhC with Rv2772c/-
Normalized LFCs for Rv3316/sdhC:
(description and provenance of datasets)
| Rv3316/sdhC | Rv2772c/- | |
| Fe_supp_jason_reseq | -1.506 | -0.606 |
| low_pH_jason_reseq | 2.392 | 1.404 |
| NO_jason_reseq | 4.038 | 3.573 |
| B6_jason_reseq | -0.387 | -0.62 |
| MHCII_jason_reseq | -2.065 | -0.458 |
| Isoniazid02 | 0.902 | 0.054 |
| Rifampicin4 | 0.081 | 1.064 |
| Ethambutol3 | 1.332 | 2.083 |
| Meropenem3 | 0.569 | -0.077 |
| Vancomycin16 | 0.663 | 0.13 |
| Rv2680_day32 | -1.599 | -2.522 |
| H37Rv_KO_MarP | -2.664 | -0.624 |
| hypoxia_3wks | -0.072 | 0.55 |
| hypoxia_6wks | -0.196 | 0.033 |
| glycerol | 0.424 | 0.301 |
| cholesterol | -0.249 | -0.047 |
| AJ | -0.333 | -0.518 |
| Bibs02 | -0.882 | -0.559 |
| Bibs02c | -3.428 | -0.139 |
| BL6 | -1.665 | 0.295 |
| BL6a | -2.469 | -0.115 |
| BXD01 | -1.372 | -0.531 |
| BXD010 | -0.973 | -0.569 |
| BXD011 | -1.077 | -1.121 |
| BXD03 | -2.461 | -0.078 |
| BXD04 | -1.914 | -0.263 |
| BXD05 | -0.995 | -0.26 |
| BXD06 | -1.22 | -0.311 |
| BXD07 | -2.481 | -1.048 |
| BXD08 | -2.497 | -0.465 |
| BXD09 | -0.645 | -1.018 |
| CAST | -0.317 | -0.806 |
| CCcont | -0.868 | 0.16 |
| DS01 | -1.477 | -0.116 |
| DS02 | 0.011 | -0.443 |
| DS04 | 0.741 | -0.08 |
| DS0c | -0.585 | -0.462 |
| GP01 | -2.333 | -1.118 |
| GP02 | -2.569 | -1.938 |
| GP0c | -2.794 | -1.169 |
| NOD | -1.923 | -1.814 |
| NZO | -0.87 | -1.51 |
| PWK | 1.118 | -0.644 |
| H37Rv_KO_CtpC | -0.546 | 1.409 |
| H37Rv_KO_CtpD | 0.225 | -1.434 |
| H37Rv_KO_Rv1272 | -1.903 | -1.294 |
| H37Rv_KO_SugABC | -0.954 | -1.145 |
| H37Rv_KO_MbtN | -1.618 | -0.946 |
| Trans05 | -1.74 | -0.698 |
| macrophage_unactivated | 0.23 | -0.275 |
| IL1 | -0.386 | -0.35 |
| Rapamycin | -0.485 | 0.608 |
| Tcell | 2.561 | 1.652 |
| GMCSF | 2.368 | -0.52 |
| IFNab | -1.01 | -1.17 |
| IFNg | 0.992 | 0.561 |
| IFNg_GMCSF1 | 1.166 | 0.088 |
| Rv1432_day32 | -1.996 | -0.518 |
| Rv1565c_day32 | -1.786 | 0.355 |
| secA2_input | 0.276 | 0.147 |
| delta_Rv3594 | -2.486 | -0.369 |
| delta_Rv3717 | -3.228 | -1.699 |
| delta_Rv3811 | -2.107 | -1.359 |
| delta_Rv0954 | -1.001 | -0.707 |
| PonA1 | -0.364 | -0.233 |
| EccD1_KO | -0.243 | 0.112 |
| EspI_KO | -0.724 | 0.128 |
| PE35_KO | -0.866 | 0.198 |
| PPE68_KO | -0.147 | 0.074 |
| glycerol2 | -1.892 | -0.381 |
| lignocerate | -0.669 | -0.291 |
| oleate | -2.121 | -1.07 |
| phosphatidylcholine | -0.59 | -0.133 |
| acetate | 0.352 | 0.176 |
| glucAc | 0.227 | 0.873 |
| Rv0950ko | 0.874 | 0.446 |
| Rv1096ko | 0.03 | 0.814 |
| Rv3684ko | -0.707 | 0.226 |
| delta_otsA_trehalose | 2.171 | -1.711 |