Top 10 genes with highest correlation to Rv3312A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1680/- | (cc=0.5035) | info on Rv1680/- |
| Rv3691/- | (cc=0.4858) | info on Rv3691/- |
| Rv3703c/- | (cc=0.4702) | info on Rv3703c/- |
| Rv3395c/- | (cc=0.4565) | info on Rv3395c/- |
| Rv3256c/- | (cc=0.4528) | info on Rv3256c/- |
| Rv3836/- | (cc=0.4501) | info on Rv3836/- |
| Rv2404c/lepA | (cc=0.447) | info on Rv2404c/lepA |
| Rv2583c/relA | (cc=0.4342) | info on Rv2583c/relA |
| Rv1569/bioF1 | (cc=0.4332) | info on Rv1569/bioF1 |
| Rv1558/- | (cc=0.4323) | info on Rv1558/- |
Correlation of Rv3312A/- with Rv3256c/-
Normalized LFCs for Rv3312A/-:
(description and provenance of datasets)
| Rv3312A/- | Rv3256c/- | |
| Fe_supp_jason_reseq | -0.35 | -0.688 |
| low_pH_jason_reseq | -0.132 | -0.338 |
| NO_jason_reseq | 0.893 | 0.0 |
| B6_jason_reseq | 1.266 | -0.071 |
| MHCII_jason_reseq | 0.295 | 0.977 |
| Isoniazid02 | 0.941 | -1.73 |
| Rifampicin4 | 0.742 | 1.562 |
| Ethambutol3 | 0.548 | -0.23 |
| Meropenem3 | 2.13 | -0.612 |
| Vancomycin16 | 0.727 | -0.207 |
| Rv2680_day32 | -0.959 | -2.899 |
| H37Rv_KO_MarP | 0.344 | -0.291 |
| hypoxia_3wks | -0.231 | -1.782 |
| hypoxia_6wks | -0.395 | -2.518 |
| glycerol | 0.726 | 2.907 |
| cholesterol | 0.382 | -0.055 |
| AJ | 0.225 | -1.477 |
| Bibs02 | -1.288 | 0.42 |
| Bibs02c | -0.975 | 0.418 |
| BL6 | -0.038 | -1.306 |
| BL6a | -0.436 | 0.65 |
| BXD01 | 0.434 | -1.178 |
| BXD010 | -0.436 | -0.816 |
| BXD011 | -0.098 | -0.9 |
| BXD03 | 0.181 | -2.202 |
| BXD04 | -0.474 | -1.725 |
| BXD05 | 0.265 | -1.701 |
| BXD06 | 0.331 | -1.393 |
| BXD07 | 0.75 | -1.59 |
| BXD08 | -0.034 | -1.456 |
| BXD09 | 0.066 | -1.866 |
| CAST | -0.017 | -0.679 |
| CCcont | 0.157 | -0.514 |
| DS01 | -0.27 | -1.668 |
| DS02 | 0.274 | -1.174 |
| DS04 | 0.022 | 1.238 |
| DS0c | 0.064 | -0.343 |
| GP01 | 0.31 | -1.134 |
| GP02 | 1.1 | -1.43 |
| GP0c | 0.597 | -0.205 |
| NOD | 0.382 | -2.031 |
| NZO | -0.377 | -1.636 |
| PWK | -0.328 | -1.458 |
| H37Rv_KO_CtpC | -0.717 | -0.877 |
| H37Rv_KO_CtpD | 0.144 | -1.386 |
| H37Rv_KO_Rv1272 | -0.912 | -0.946 |
| H37Rv_KO_SugABC | -0.312 | 1.043 |
| H37Rv_KO_MbtN | 0.777 | -0.141 |
| Trans05 | -0.372 | 0.0 |
| macrophage_unactivated | 0.133 | 0.338 |
| IL1 | 0.113 | 1.391 |
| Rapamycin | 0.292 | 0.485 |
| Tcell | 0.336 | 0.978 |
| GMCSF | -0.034 | -0.813 |
| IFNab | -0.804 | -0.931 |
| IFNg | 0.551 | 1.849 |
| IFNg_GMCSF1 | -0.478 | 0.647 |
| Rv1432_day32 | 0.48 | -0.727 |
| Rv1565c_day32 | -3.838 | -4.854 |
| secA2_input | 0.243 | -0.712 |
| delta_Rv3594 | 1.41 | 2.47 |
| delta_Rv3717 | 1.221 | 3.651 |
| delta_Rv3811 | 0.55 | 2.668 |
| delta_Rv0954 | 1.469 | 1.009 |
| PonA1 | 1.13 | -0.223 |
| EccD1_KO | -0.747 | -1.365 |
| EspI_KO | -0.374 | -0.856 |
| PE35_KO | -0.875 | -0.957 |
| PPE68_KO | -0.771 | -2.921 |
| glycerol2 | 1.241 | -0.595 |
| lignocerate | 1.444 | -0.024 |
| oleate | 0.771 | -2.393 |
| phosphatidylcholine | 1.408 | -0.69 |
| acetate | 0.48 | 0.324 |
| glucAc | 0.764 | 0.681 |
| Rv0950ko | 0.519 | 1.182 |
| Rv1096ko | 0.452 | 0.63 |
| Rv3684ko | 0.252 | -0.802 |
| delta_otsA_trehalose | -0.354 | -0.965 |