Top 10 genes with highest correlation to Rv3312A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1680/- | (cc=0.5035) | info on Rv1680/- |
| Rv3691/- | (cc=0.4858) | info on Rv3691/- |
| Rv3703c/- | (cc=0.4702) | info on Rv3703c/- |
| Rv3395c/- | (cc=0.4565) | info on Rv3395c/- |
| Rv3256c/- | (cc=0.4528) | info on Rv3256c/- |
| Rv3836/- | (cc=0.4501) | info on Rv3836/- |
| Rv2404c/lepA | (cc=0.447) | info on Rv2404c/lepA |
| Rv2583c/relA | (cc=0.4342) | info on Rv2583c/relA |
| Rv1569/bioF1 | (cc=0.4332) | info on Rv1569/bioF1 |
| Rv1558/- | (cc=0.4323) | info on Rv1558/- |
Correlation of Rv3312A/- with Rv1569/bioF1
Normalized LFCs for Rv3312A/-:
(description and provenance of datasets)
| Rv3312A/- | Rv1569/bioF1 | |
| Fe_supp_jason_reseq | -0.35 | 1.1 |
| low_pH_jason_reseq | -0.132 | 1.042 |
| NO_jason_reseq | 0.893 | 0.612 |
| B6_jason_reseq | 1.266 | -3.205 |
| MHCII_jason_reseq | 0.295 | -2.159 |
| Isoniazid02 | 0.941 | 0.533 |
| Rifampicin4 | 0.742 | 0.56 |
| Ethambutol3 | 0.548 | 1.251 |
| Meropenem3 | 2.13 | 2.153 |
| Vancomycin16 | 0.727 | -0.287 |
| Rv2680_day32 | -0.959 | -4.081 |
| H37Rv_KO_MarP | 0.344 | -0.133 |
| hypoxia_3wks | -0.231 | -0.49 |
| hypoxia_6wks | -0.395 | -1.731 |
| glycerol | 0.726 | -4.463 |
| cholesterol | 0.382 | -3.71 |
| AJ | 0.225 | -5.943 |
| Bibs02 | -1.288 | -4.684 |
| Bibs02c | -0.975 | -5.359 |
| BL6 | -0.038 | -3.204 |
| BL6a | -0.436 | -4.531 |
| BXD01 | 0.434 | -3.336 |
| BXD010 | -0.436 | -3.281 |
| BXD011 | -0.098 | -2.815 |
| BXD03 | 0.181 | -3.464 |
| BXD04 | -0.474 | -3.168 |
| BXD05 | 0.265 | -2.877 |
| BXD06 | 0.331 | -3.419 |
| BXD07 | 0.75 | -3.547 |
| BXD08 | -0.034 | -2.079 |
| BXD09 | 0.066 | -3.6 |
| CAST | -0.017 | -3.792 |
| CCcont | 0.157 | 0.26 |
| DS01 | -0.27 | -6.0 |
| DS02 | 0.274 | -5.571 |
| DS04 | 0.022 | -3.195 |
| DS0c | 0.064 | -5.556 |
| GP01 | 0.31 | -1.923 |
| GP02 | 1.1 | -1.779 |
| GP0c | 0.597 | 1.55 |
| NOD | 0.382 | -4.013 |
| NZO | -0.377 | -5.109 |
| PWK | -0.328 | -4.651 |
| H37Rv_KO_CtpC | -0.717 | -3.363 |
| H37Rv_KO_CtpD | 0.144 | -1.93 |
| H37Rv_KO_Rv1272 | -0.912 | -3.612 |
| H37Rv_KO_SugABC | -0.312 | -1.509 |
| H37Rv_KO_MbtN | 0.777 | -0.692 |
| Trans05 | -0.372 | -3.217 |
| macrophage_unactivated | 0.133 | 2.108 |
| IL1 | 0.113 | -1.21 |
| Rapamycin | 0.292 | 0.35 |
| Tcell | 0.336 | 1.336 |
| GMCSF | -0.034 | 1.893 |
| IFNab | -0.804 | 2.095 |
| IFNg | 0.551 | -0.216 |
| IFNg_GMCSF1 | -0.478 | -2.614 |
| Rv1432_day32 | 0.48 | -1.304 |
| Rv1565c_day32 | -3.838 | -5.178 |
| secA2_input | 0.243 | 0.441 |
| delta_Rv3594 | 1.41 | 0.277 |
| delta_Rv3717 | 1.221 | 0.653 |
| delta_Rv3811 | 0.55 | -1.096 |
| delta_Rv0954 | 1.469 | 0.939 |
| PonA1 | 1.13 | 0.379 |
| EccD1_KO | -0.747 | 0.033 |
| EspI_KO | -0.374 | -1.492 |
| PE35_KO | -0.875 | -1.173 |
| PPE68_KO | -0.771 | -1.456 |
| glycerol2 | 1.241 | -0.68 |
| lignocerate | 1.444 | 0.537 |
| oleate | 0.771 | -0.688 |
| phosphatidylcholine | 1.408 | 0.27 |
| acetate | 0.48 | -0.369 |
| glucAc | 0.764 | -0.501 |
| Rv0950ko | 0.519 | -0.724 |
| Rv1096ko | 0.452 | 0.335 |
| Rv3684ko | 0.252 | -0.547 |
| delta_otsA_trehalose | -0.354 | 0.424 |