Top 10 genes with highest correlation to Rv3312A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1680/- | (cc=0.5035) | info on Rv1680/- |
| Rv3691/- | (cc=0.4858) | info on Rv3691/- |
| Rv3703c/- | (cc=0.4702) | info on Rv3703c/- |
| Rv3395c/- | (cc=0.4565) | info on Rv3395c/- |
| Rv3256c/- | (cc=0.4528) | info on Rv3256c/- |
| Rv3836/- | (cc=0.4501) | info on Rv3836/- |
| Rv2404c/lepA | (cc=0.447) | info on Rv2404c/lepA |
| Rv2583c/relA | (cc=0.4342) | info on Rv2583c/relA |
| Rv1569/bioF1 | (cc=0.4332) | info on Rv1569/bioF1 |
| Rv1558/- | (cc=0.4323) | info on Rv1558/- |
Correlation of Rv3312A/- with Rv2404c/lepA
Normalized LFCs for Rv3312A/-:
(description and provenance of datasets)
| Rv3312A/- | Rv2404c/lepA | |
| Fe_supp_jason_reseq | -0.35 | 0.598 |
| low_pH_jason_reseq | -0.132 | -1.467 |
| NO_jason_reseq | 0.893 | 2.108 |
| B6_jason_reseq | 1.266 | 0.881 |
| MHCII_jason_reseq | 0.295 | -0.098 |
| Isoniazid02 | 0.941 | 5.905 |
| Rifampicin4 | 0.742 | 1.597 |
| Ethambutol3 | 0.548 | 1.79 |
| Meropenem3 | 2.13 | 0.264 |
| Vancomycin16 | 0.727 | 0.846 |
| Rv2680_day32 | -0.959 | -0.613 |
| H37Rv_KO_MarP | 0.344 | 1.555 |
| hypoxia_3wks | -0.231 | -3.274 |
| hypoxia_6wks | -0.395 | -3.802 |
| glycerol | 0.726 | 1.044 |
| cholesterol | 0.382 | -0.171 |
| AJ | 0.225 | -0.41 |
| Bibs02 | -1.288 | -1.46 |
| Bibs02c | -0.975 | -0.94 |
| BL6 | -0.038 | -1.237 |
| BL6a | -0.436 | 0.098 |
| BXD01 | 0.434 | -1.128 |
| BXD010 | -0.436 | 0.312 |
| BXD011 | -0.098 | 0.269 |
| BXD03 | 0.181 | 0.192 |
| BXD04 | -0.474 | -0.987 |
| BXD05 | 0.265 | 0.654 |
| BXD06 | 0.331 | 1.065 |
| BXD07 | 0.75 | 0.068 |
| BXD08 | -0.034 | 0.04 |
| BXD09 | 0.066 | -0.265 |
| CAST | -0.017 | -1.146 |
| CCcont | 0.157 | 0.0 |
| DS01 | -0.27 | -1.461 |
| DS02 | 0.274 | -2.658 |
| DS04 | 0.022 | -0.698 |
| DS0c | 0.064 | -1.422 |
| GP01 | 0.31 | -0.384 |
| GP02 | 1.1 | -0.867 |
| GP0c | 0.597 | -0.506 |
| NOD | 0.382 | -0.023 |
| NZO | -0.377 | -0.928 |
| PWK | -0.328 | -1.324 |
| H37Rv_KO_CtpC | -0.717 | -1.832 |
| H37Rv_KO_CtpD | 0.144 | -0.957 |
| H37Rv_KO_Rv1272 | -0.912 | -0.3 |
| H37Rv_KO_SugABC | -0.312 | -0.073 |
| H37Rv_KO_MbtN | 0.777 | 0.832 |
| Trans05 | -0.372 | -1.161 |
| macrophage_unactivated | 0.133 | 0.451 |
| IL1 | 0.113 | 0.249 |
| Rapamycin | 0.292 | 0.319 |
| Tcell | 0.336 | 0.068 |
| GMCSF | -0.034 | 0.816 |
| IFNab | -0.804 | -0.408 |
| IFNg | 0.551 | 0.224 |
| IFNg_GMCSF1 | -0.478 | 0.327 |
| Rv1432_day32 | 0.48 | 0.824 |
| Rv1565c_day32 | -3.838 | -2.443 |
| secA2_input | 0.243 | -0.542 |
| delta_Rv3594 | 1.41 | 3.552 |
| delta_Rv3717 | 1.221 | 4.823 |
| delta_Rv3811 | 0.55 | 2.528 |
| delta_Rv0954 | 1.469 | 3.693 |
| PonA1 | 1.13 | 0.0 |
| EccD1_KO | -0.747 | 0.056 |
| EspI_KO | -0.374 | 0.816 |
| PE35_KO | -0.875 | 0.298 |
| PPE68_KO | -0.771 | 0.915 |
| glycerol2 | 1.241 | -0.094 |
| lignocerate | 1.444 | -1.316 |
| oleate | 0.771 | -0.703 |
| phosphatidylcholine | 1.408 | -1.192 |
| acetate | 0.48 | -0.111 |
| glucAc | 0.764 | -0.084 |
| Rv0950ko | 0.519 | 0.651 |
| Rv1096ko | 0.452 | -0.19 |
| Rv3684ko | 0.252 | 1.002 |
| delta_otsA_trehalose | -0.354 | -0.866 |