Top 10 genes with highest correlation to Rv3308/pmmB:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3445c/esxU | (cc=0.4973) | info on Rv3445c/esxU |
| Rv0366c/- | (cc=0.4891) | info on Rv0366c/- |
| Rv0265c/- | (cc=0.4848) | info on Rv0265c/- |
| Rv2636/- | (cc=0.4789) | info on Rv2636/- |
| Rv3506/fadD17 | (cc=0.477) | info on Rv3506/fadD17 |
| Rv1442/bisC | (cc=0.472) | info on Rv1442/bisC |
| Rv0857/- | (cc=0.4692) | info on Rv0857/- |
| Rv0851c/- | (cc=0.4618) | info on Rv0851c/- |
| Rv3091/- | (cc=0.4434) | info on Rv3091/- |
| Rv0266c/oplA | (cc=0.4413) | info on Rv0266c/oplA |
Correlation of Rv3308/pmmB with Rv3091/-
Normalized LFCs for Rv3308/pmmB:
(description and provenance of datasets)
| Rv3308/pmmB | Rv3091/- | |
| Fe_supp_jason_reseq | -1.129 | -1.219 |
| low_pH_jason_reseq | -0.303 | -0.467 |
| NO_jason_reseq | -0.213 | -0.047 |
| B6_jason_reseq | 0.085 | -0.054 |
| MHCII_jason_reseq | 0.842 | 0.665 |
| Isoniazid02 | -0.797 | 0.178 |
| Rifampicin4 | -0.555 | -0.406 |
| Ethambutol3 | -0.454 | 0.191 |
| Meropenem3 | 0.587 | -0.533 |
| Vancomycin16 | -0.448 | -0.08 |
| Rv2680_day32 | -0.049 | 0.061 |
| H37Rv_KO_MarP | -0.329 | 0.09 |
| hypoxia_3wks | 0.191 | -0.415 |
| hypoxia_6wks | -0.213 | -0.758 |
| glycerol | -0.227 | -0.116 |
| cholesterol | -0.229 | -0.216 |
| AJ | 0.165 | 0.402 |
| Bibs02 | -0.346 | 0.159 |
| Bibs02c | 0.135 | 0.38 |
| BL6 | -0.501 | -0.504 |
| BL6a | -0.39 | -0.623 |
| BXD01 | -0.206 | -0.765 |
| BXD010 | -0.464 | -0.516 |
| BXD011 | -0.931 | -0.615 |
| BXD03 | -0.568 | -0.608 |
| BXD04 | -0.691 | -0.355 |
| BXD05 | -0.678 | -0.711 |
| BXD06 | -0.588 | -0.744 |
| BXD07 | -0.624 | -0.796 |
| BXD08 | -0.409 | -0.096 |
| BXD09 | -0.884 | -0.552 |
| CAST | -0.242 | -0.527 |
| CCcont | -0.643 | -0.771 |
| DS01 | -0.113 | 0.183 |
| DS02 | -0.26 | 0.377 |
| DS04 | 0.089 | 0.512 |
| DS0c | -0.891 | -0.534 |
| GP01 | 0.589 | 0.566 |
| GP02 | -1.469 | -0.02 |
| GP0c | -0.071 | 0.105 |
| NOD | 0.281 | -0.291 |
| NZO | -0.095 | -0.627 |
| PWK | -0.824 | -0.112 |
| H37Rv_KO_CtpC | -1.124 | -1.014 |
| H37Rv_KO_CtpD | -0.876 | -0.557 |
| H37Rv_KO_Rv1272 | -2.255 | -0.129 |
| H37Rv_KO_SugABC | 0.581 | -0.57 |
| H37Rv_KO_MbtN | -0.782 | -1.173 |
| Trans05 | -0.686 | 0.226 |
| macrophage_unactivated | -0.855 | -0.581 |
| IL1 | 0.389 | 0.433 |
| Rapamycin | -0.129 | 0.792 |
| Tcell | 0.345 | -0.482 |
| GMCSF | -0.38 | 0.417 |
| IFNab | -0.085 | 0.408 |
| IFNg | -0.187 | 0.588 |
| IFNg_GMCSF1 | 0.085 | 0.273 |
| Rv1432_day32 | -0.851 | -0.009 |
| Rv1565c_day32 | 0.449 | 0.6 |
| secA2_input | 1.605 | 0.341 |
| delta_Rv3594 | -1.302 | -0.089 |
| delta_Rv3717 | -1.291 | -0.04 |
| delta_Rv3811 | -0.455 | -0.793 |
| delta_Rv0954 | -0.141 | -0.509 |
| PonA1 | 0.226 | -0.418 |
| EccD1_KO | -0.286 | 0.056 |
| EspI_KO | -0.556 | 0.214 |
| PE35_KO | -0.21 | 0.265 |
| PPE68_KO | -0.278 | 0.467 |
| glycerol2 | 0.591 | 0.07 |
| lignocerate | 0.575 | 0.329 |
| oleate | 0.525 | -0.013 |
| phosphatidylcholine | 0.882 | 0.427 |
| acetate | 0.153 | -0.071 |
| glucAc | 0.041 | -0.09 |
| Rv0950ko | -0.305 | 0.127 |
| Rv1096ko | 1.221 | 0.666 |
| Rv3684ko | -0.196 | 0.0 |
| delta_otsA_trehalose | 0.942 | 0.276 |