Top 10 genes with highest correlation to Rv3308/pmmB:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3445c/esxU | (cc=0.4973) | info on Rv3445c/esxU |
| Rv0366c/- | (cc=0.4891) | info on Rv0366c/- |
| Rv0265c/- | (cc=0.4848) | info on Rv0265c/- |
| Rv2636/- | (cc=0.4789) | info on Rv2636/- |
| Rv3506/fadD17 | (cc=0.477) | info on Rv3506/fadD17 |
| Rv1442/bisC | (cc=0.472) | info on Rv1442/bisC |
| Rv0857/- | (cc=0.4692) | info on Rv0857/- |
| Rv0851c/- | (cc=0.4618) | info on Rv0851c/- |
| Rv3091/- | (cc=0.4434) | info on Rv3091/- |
| Rv0266c/oplA | (cc=0.4413) | info on Rv0266c/oplA |
Correlation of Rv3308/pmmB with Rv2636/-
Normalized LFCs for Rv3308/pmmB:
(description and provenance of datasets)
| Rv3308/pmmB | Rv2636/- | |
| Fe_supp_jason_reseq | -1.129 | -0.073 |
| low_pH_jason_reseq | -0.303 | -0.942 |
| NO_jason_reseq | -0.213 | 0.071 |
| B6_jason_reseq | 0.085 | 1.243 |
| MHCII_jason_reseq | 0.842 | 1.783 |
| Isoniazid02 | -0.797 | -0.55 |
| Rifampicin4 | -0.555 | 0.162 |
| Ethambutol3 | -0.454 | 0.417 |
| Meropenem3 | 0.587 | -1.06 |
| Vancomycin16 | -0.448 | -0.642 |
| Rv2680_day32 | -0.049 | 1.092 |
| H37Rv_KO_MarP | -0.329 | 0.013 |
| hypoxia_3wks | 0.191 | 0.056 |
| hypoxia_6wks | -0.213 | -0.186 |
| glycerol | -0.227 | 0.263 |
| cholesterol | -0.229 | 0.048 |
| AJ | 0.165 | 0.345 |
| Bibs02 | -0.346 | 0.177 |
| Bibs02c | 0.135 | 0.358 |
| BL6 | -0.501 | -0.987 |
| BL6a | -0.39 | -0.442 |
| BXD01 | -0.206 | -1.222 |
| BXD010 | -0.464 | -0.989 |
| BXD011 | -0.931 | -1.507 |
| BXD03 | -0.568 | -1.037 |
| BXD04 | -0.691 | -1.588 |
| BXD05 | -0.678 | -0.968 |
| BXD06 | -0.588 | -1.495 |
| BXD07 | -0.624 | -1.077 |
| BXD08 | -0.409 | -0.781 |
| BXD09 | -0.884 | -1.87 |
| CAST | -0.242 | 0.174 |
| CCcont | -0.643 | -1.767 |
| DS01 | -0.113 | 0.399 |
| DS02 | -0.26 | 0.578 |
| DS04 | 0.089 | -0.409 |
| DS0c | -0.891 | 0.083 |
| GP01 | 0.589 | -0.456 |
| GP02 | -1.469 | -0.744 |
| GP0c | -0.071 | -0.677 |
| NOD | 0.281 | 0.574 |
| NZO | -0.095 | 0.126 |
| PWK | -0.824 | -0.057 |
| H37Rv_KO_CtpC | -1.124 | -1.77 |
| H37Rv_KO_CtpD | -0.876 | -0.581 |
| H37Rv_KO_Rv1272 | -2.255 | -1.089 |
| H37Rv_KO_SugABC | 0.581 | -1.719 |
| H37Rv_KO_MbtN | -0.782 | -0.848 |
| Trans05 | -0.686 | -0.088 |
| macrophage_unactivated | -0.855 | -0.653 |
| IL1 | 0.389 | -0.445 |
| Rapamycin | -0.129 | -0.546 |
| Tcell | 0.345 | -0.867 |
| GMCSF | -0.38 | -0.446 |
| IFNab | -0.085 | -1.155 |
| IFNg | -0.187 | -0.136 |
| IFNg_GMCSF1 | 0.085 | -0.079 |
| Rv1432_day32 | -0.851 | -0.16 |
| Rv1565c_day32 | 0.449 | 0.062 |
| secA2_input | 1.605 | 1.133 |
| delta_Rv3594 | -1.302 | -0.601 |
| delta_Rv3717 | -1.291 | -0.271 |
| delta_Rv3811 | -0.455 | -0.458 |
| delta_Rv0954 | -0.141 | 0.151 |
| PonA1 | 0.226 | -0.324 |
| EccD1_KO | -0.286 | -0.151 |
| EspI_KO | -0.556 | 0.271 |
| PE35_KO | -0.21 | -0.079 |
| PPE68_KO | -0.278 | -0.266 |
| glycerol2 | 0.591 | 0.534 |
| lignocerate | 0.575 | 0.498 |
| oleate | 0.525 | 0.303 |
| phosphatidylcholine | 0.882 | 0.709 |
| acetate | 0.153 | 0.156 |
| glucAc | 0.041 | 0.155 |
| Rv0950ko | -0.305 | -0.027 |
| Rv1096ko | 1.221 | -0.25 |
| Rv3684ko | -0.196 | -0.662 |
| delta_otsA_trehalose | 0.942 | 0.719 |