Top 10 genes with highest correlation to Rv3304/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2645/- | (cc=0.4444) | info on Rv2645/- |
| Rv3777/- | (cc=0.4319) | info on Rv3777/- |
| Rv3463/- | (cc=0.4139) | info on Rv3463/- |
| Rv2334/cysK1 | (cc=0.3777) | info on Rv2334/cysK1 |
| Rv0302/- | (cc=0.3773) | info on Rv0302/- |
| Rv2232/ptkA | (cc=0.3741) | info on Rv2232/ptkA |
| Rv2571c/- | (cc=0.3738) | info on Rv2571c/- |
| Rv0695/- | (cc=0.3659) | info on Rv0695/- |
| Rv1033c/trcR | (cc=0.3617) | info on Rv1033c/trcR |
| Rv0927c/- | (cc=0.3591) | info on Rv0927c/- |
Correlation of Rv3304/- with Rv3463/-
Normalized LFCs for Rv3304/-:
(description and provenance of datasets)
| Rv3304/- | Rv3463/- | |
| Fe_supp_jason_reseq | 0.35 | -0.474 |
| low_pH_jason_reseq | 1.206 | -0.557 |
| NO_jason_reseq | -1.137 | -0.732 |
| B6_jason_reseq | -0.123 | 0.192 |
| MHCII_jason_reseq | -0.026 | -0.018 |
| Isoniazid02 | 0.982 | -0.997 |
| Rifampicin4 | -2.28 | -0.046 |
| Ethambutol3 | 0.0 | 0.491 |
| Meropenem3 | -0.636 | 0.906 |
| Vancomycin16 | -0.817 | -0.249 |
| Rv2680_day32 | 0.131 | -0.349 |
| H37Rv_KO_MarP | 1.659 | 1.239 |
| hypoxia_3wks | 0.0 | 0.104 |
| hypoxia_6wks | 1.054 | -0.48 |
| glycerol | 0.651 | 0.436 |
| cholesterol | -1.453 | -0.369 |
| AJ | 0.931 | -0.348 |
| Bibs02 | 0.335 | -0.436 |
| Bibs02c | 0.674 | 0.149 |
| BL6 | -0.725 | -0.477 |
| BL6a | 0.994 | -0.297 |
| BXD01 | 0.057 | -0.246 |
| BXD010 | 1.198 | -0.202 |
| BXD011 | -0.088 | -0.601 |
| BXD03 | 0.392 | -0.311 |
| BXD04 | 0.027 | 0.516 |
| BXD05 | -0.888 | 0.026 |
| BXD06 | 0.058 | -0.296 |
| BXD07 | -0.095 | -0.377 |
| BXD08 | 0.992 | 0.135 |
| BXD09 | 0.334 | -0.496 |
| CAST | -0.27 | 0.409 |
| CCcont | 0.274 | -0.248 |
| DS01 | 1.519 | -0.265 |
| DS02 | 0.477 | 0.469 |
| DS04 | 0.0 | 0.365 |
| DS0c | -0.049 | 1.037 |
| GP01 | -0.045 | -0.833 |
| GP02 | -1.117 | -0.753 |
| GP0c | -0.253 | -0.626 |
| NOD | -0.208 | 0.36 |
| NZO | 0.087 | 0.25 |
| PWK | -0.99 | 0.077 |
| H37Rv_KO_CtpC | -0.706 | -0.033 |
| H37Rv_KO_CtpD | -1.199 | -1.108 |
| H37Rv_KO_Rv1272 | -0.477 | -0.976 |
| H37Rv_KO_SugABC | 0.064 | 0.465 |
| H37Rv_KO_MbtN | -1.23 | -0.508 |
| Trans05 | -0.976 | -0.629 |
| macrophage_unactivated | -0.496 | -1.689 |
| IL1 | -1.317 | -0.887 |
| Rapamycin | -2.133 | -1.059 |
| Tcell | -0.668 | -0.124 |
| GMCSF | -1.489 | 0.0 |
| IFNab | 0.369 | -1.079 |
| IFNg | -2.143 | -0.799 |
| IFNg_GMCSF1 | -1.395 | -0.729 |
| Rv1432_day32 | -0.035 | -0.438 |
| Rv1565c_day32 | -1.085 | -0.69 |
| secA2_input | 0.186 | 0.964 |
| delta_Rv3594 | -1.265 | -0.659 |
| delta_Rv3717 | -1.36 | -0.059 |
| delta_Rv3811 | -1.692 | -1.136 |
| delta_Rv0954 | -1.129 | -0.682 |
| PonA1 | -0.41 | -0.815 |
| EccD1_KO | 0.174 | 0.03 |
| EspI_KO | 0.299 | 0.148 |
| PE35_KO | 0.922 | -0.105 |
| PPE68_KO | 1.081 | 0.0 |
| glycerol2 | 2.089 | 1.401 |
| lignocerate | 0.065 | 0.426 |
| oleate | 0.149 | 0.024 |
| phosphatidylcholine | 0.111 | 0.819 |
| acetate | -2.59 | -0.414 |
| glucAc | -1.61 | -0.555 |
| Rv0950ko | 0.874 | 0.639 |
| Rv1096ko | 2.542 | 0.317 |
| Rv3684ko | 0.147 | -0.973 |
| delta_otsA_trehalose | 0.065 | 0.0 |