Top 10 genes with highest correlation to Rv3304/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2645/- | (cc=0.4444) | info on Rv2645/- |
| Rv3777/- | (cc=0.4319) | info on Rv3777/- |
| Rv3463/- | (cc=0.4139) | info on Rv3463/- |
| Rv2334/cysK1 | (cc=0.3777) | info on Rv2334/cysK1 |
| Rv0302/- | (cc=0.3773) | info on Rv0302/- |
| Rv2232/ptkA | (cc=0.3741) | info on Rv2232/ptkA |
| Rv2571c/- | (cc=0.3738) | info on Rv2571c/- |
| Rv0695/- | (cc=0.3659) | info on Rv0695/- |
| Rv1033c/trcR | (cc=0.3617) | info on Rv1033c/trcR |
| Rv0927c/- | (cc=0.3591) | info on Rv0927c/- |
Correlation of Rv3304/- with Rv2232/ptkA
Normalized LFCs for Rv3304/-:
(description and provenance of datasets)
| Rv3304/- | Rv2232/ptkA | |
| Fe_supp_jason_reseq | 0.35 | -1.782 |
| low_pH_jason_reseq | 1.206 | -0.626 |
| NO_jason_reseq | -1.137 | 0.108 |
| B6_jason_reseq | -0.123 | 0.489 |
| MHCII_jason_reseq | -0.026 | 1.444 |
| Isoniazid02 | 0.982 | 0.455 |
| Rifampicin4 | -2.28 | -0.439 |
| Ethambutol3 | 0.0 | 0.638 |
| Meropenem3 | -0.636 | 1.542 |
| Vancomycin16 | -0.817 | -0.43 |
| Rv2680_day32 | 0.131 | 0.947 |
| H37Rv_KO_MarP | 1.659 | 1.226 |
| hypoxia_3wks | 0.0 | 0.112 |
| hypoxia_6wks | 1.054 | -0.311 |
| glycerol | 0.651 | 1.271 |
| cholesterol | -1.453 | 0.0 |
| AJ | 0.931 | 0.156 |
| Bibs02 | 0.335 | 0.588 |
| Bibs02c | 0.674 | 1.441 |
| BL6 | -0.725 | -2.396 |
| BL6a | 0.994 | 0.209 |
| BXD01 | 0.057 | -0.608 |
| BXD010 | 1.198 | -1.641 |
| BXD011 | -0.088 | -0.741 |
| BXD03 | 0.392 | -2.017 |
| BXD04 | 0.027 | 0.131 |
| BXD05 | -0.888 | -0.462 |
| BXD06 | 0.058 | -0.335 |
| BXD07 | -0.095 | -0.448 |
| BXD08 | 0.992 | -0.357 |
| BXD09 | 0.334 | -1.346 |
| CAST | -0.27 | 0.517 |
| CCcont | 0.274 | -2.063 |
| DS01 | 1.519 | 0.71 |
| DS02 | 0.477 | 0.654 |
| DS04 | 0.0 | 0.583 |
| DS0c | -0.049 | 0.06 |
| GP01 | -0.045 | -0.164 |
| GP02 | -1.117 | 0.648 |
| GP0c | -0.253 | -0.421 |
| NOD | -0.208 | 0.604 |
| NZO | 0.087 | 0.309 |
| PWK | -0.99 | -0.492 |
| H37Rv_KO_CtpC | -0.706 | -0.466 |
| H37Rv_KO_CtpD | -1.199 | -1.686 |
| H37Rv_KO_Rv1272 | -0.477 | -0.257 |
| H37Rv_KO_SugABC | 0.064 | 0.529 |
| H37Rv_KO_MbtN | -1.23 | -1.024 |
| Trans05 | -0.976 | -2.026 |
| macrophage_unactivated | -0.496 | -3.592 |
| IL1 | -1.317 | -4.547 |
| Rapamycin | -2.133 | -3.67 |
| Tcell | -0.668 | -2.401 |
| GMCSF | -1.489 | -2.572 |
| IFNab | 0.369 | -2.098 |
| IFNg | -2.143 | -2.603 |
| IFNg_GMCSF1 | -1.395 | -2.181 |
| Rv1432_day32 | -0.035 | 1.119 |
| Rv1565c_day32 | -1.085 | -0.24 |
| secA2_input | 0.186 | 0.969 |
| delta_Rv3594 | -1.265 | -1.048 |
| delta_Rv3717 | -1.36 | -0.394 |
| delta_Rv3811 | -1.692 | -0.498 |
| delta_Rv0954 | -1.129 | -1.16 |
| PonA1 | -0.41 | 0.227 |
| EccD1_KO | 0.174 | -0.388 |
| EspI_KO | 0.299 | 1.8 |
| PE35_KO | 0.922 | -0.254 |
| PPE68_KO | 1.081 | 0.749 |
| glycerol2 | 2.089 | -1.354 |
| lignocerate | 0.065 | -1.695 |
| oleate | 0.149 | -0.315 |
| phosphatidylcholine | 0.111 | -1.217 |
| acetate | -2.59 | -1.445 |
| glucAc | -1.61 | -1.306 |
| Rv0950ko | 0.874 | 0.078 |
| Rv1096ko | 2.542 | -0.793 |
| Rv3684ko | 0.147 | 0.0 |
| delta_otsA_trehalose | 0.065 | 0.83 |