TnSeqCorr

Top 10 genes with highest correlation to Rv3302c/glpD2:

update plotcorrelationlink to info on gene
Rv1122/gnd2 (cc=0.8513) info on Rv1122/gnd2
Rv1631/coaE (cc=0.6972) info on Rv1631/coaE
Rv0412c/- (cc=0.5469) info on Rv0412c/-
Rv0410c/pknG (cc=0.5389) info on Rv0410c/pknG
Rv3583c/- (cc=0.4879) info on Rv3583c/-
Rv2115c/mpa (cc=0.4817) info on Rv2115c/mpa
Rv0411c/glnH (cc=0.4626) info on Rv0411c/glnH
Rv2097c/pafA (cc=0.4546) info on Rv2097c/pafA
Rv3215/entC (cc=0.4411) info on Rv3215/entC
Rv1388/mihF (cc=0.4389) info on Rv1388/mihF

Correlation of Rv3302c/glpD2 with Rv0411c/glnH

Normalized LFCs for Rv3302c/glpD2:
(description and provenance of datasets)
Rv3302c/glpD2Rv0411c/glnH
Fe_supp_jason_reseq

1.579

0.923

low_pH_jason_reseq

0.0

0.0

NO_jason_reseq

0.0

0.0

B6_jason_reseq

0.0

0.0

MHCII_jason_reseq

0.0

0.0

Isoniazid02

0.0

-0.383

Rifampicin4

0.0

-0.712

Ethambutol3

0.0

-0.32

Meropenem3

0.0

-0.315

Vancomycin16

0.0

-0.698

Rv2680_day32

0.0

-0.554

H37Rv_KO_MarP

0.0

-3.512

hypoxia_3wks

0.0

0.0

hypoxia_6wks

0.0

0.0

glycerol

0.0

0.0

cholesterol

0.0

0.0

AJ

0.0

0.0

Bibs02

0.0

0.0

Bibs02c

0.0

0.0

BL6

0.0

0.0

BL6a

0.0

0.198

BXD01

0.0

0.0

BXD010

0.0

0.0

BXD011

0.0

0.0

BXD03

0.0

0.0

BXD04

0.0

0.0

BXD05

0.0

0.0

BXD06

0.0

0.0

BXD07

0.0

0.0

BXD08

0.0

0.0

BXD09

0.0

0.0

CAST

0.0

0.0

CCcont

0.0

1.43

DS01

0.0

0.0

DS02

0.0

0.0

DS04

0.0

0.0

DS0c

0.0

1.455

GP01

0.0

0.0

GP02

0.0

0.0

GP0c

0.0

0.0

NOD

0.0

0.0

NZO

0.0

0.0

PWK

0.0

0.0

H37Rv_KO_CtpC

0.0

0.688

H37Rv_KO_CtpD

0.0

0.348

H37Rv_KO_Rv1272

0.0

0.0

H37Rv_KO_SugABC

0.0

0.0

H37Rv_KO_MbtN

0.0

0.283

Trans05

0.0

0.0

macrophage_unactivated

0.0

0.0

IL1

0.0

0.0

Rapamycin

0.0

0.0

Tcell

0.0

0.0

GMCSF

0.0

0.0

IFNab

0.0

0.0

IFNg

0.0

0.0

IFNg_GMCSF1

0.0

0.0

Rv1432_day32

0.0

0.0

Rv1565c_day32

0.0

0.0

secA2_input

0.0

-0.477

delta_Rv3594

0.0

-0.211

delta_Rv3717

0.0

-0.174

delta_Rv3811

0.0

-0.205

delta_Rv0954

0.0

1.292

PonA1

4.912

4.34

EccD1_KO

0.0

1.059

EspI_KO

0.0

1.146

PE35_KO

0.0

4.311

PPE68_KO

0.0

4.163

glycerol2

0.0

-0.531

lignocerate

0.0

-0.462

oleate

0.0

-0.537

phosphatidylcholine

0.0

-0.531

acetate

0.0

-0.63

glucAc

0.0

-0.392

Rv0950ko

0.0

-1.523

Rv1096ko

0.0

0.0

Rv3684ko

0.0

1.772

delta_otsA_trehalose

0.0

-1.275