Top 10 genes with highest correlation to Rv3301c/phoY1:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2623/TB31.7 | (cc=0.5231) | info on Rv2623/TB31.7 |
| Rv2813/- | (cc=0.51) | info on Rv2813/- |
| Rv2544/lppB | (cc=0.5047) | info on Rv2544/lppB |
| Rv2960c/- | (cc=0.5033) | info on Rv2960c/- |
| Rv1987/- | (cc=0.4721) | info on Rv1987/- |
| Rv3045/adhC | (cc=0.4665) | info on Rv3045/adhC |
| Rv3010c/pfkA | (cc=0.4648) | info on Rv3010c/pfkA |
| Rv3133c/devR | (cc=0.4559) | info on Rv3133c/devR |
| Rv0945/- | (cc=0.454) | info on Rv0945/- |
| Rv2276/cyp121 | (cc=0.4518) | info on Rv2276/cyp121 |
Correlation of Rv3301c/phoY1 with Rv0945/-
Normalized LFCs for Rv3301c/phoY1:
(description and provenance of datasets)
| Rv3301c/phoY1 | Rv0945/- | |
| Fe_supp_jason_reseq | 0.633 | -1.432 |
| low_pH_jason_reseq | -0.515 | 0.216 |
| NO_jason_reseq | 0.189 | -1.769 |
| B6_jason_reseq | -0.846 | -2.038 |
| MHCII_jason_reseq | 1.171 | -0.851 |
| Isoniazid02 | -0.781 | -0.141 |
| Rifampicin4 | -1.362 | -0.449 |
| Ethambutol3 | -0.741 | -0.479 |
| Meropenem3 | -0.521 | -0.285 |
| Vancomycin16 | -0.783 | 0.318 |
| Rv2680_day32 | -0.799 | 0.896 |
| H37Rv_KO_MarP | 0.04 | 0.265 |
| hypoxia_3wks | -3.369 | -2.333 |
| hypoxia_6wks | -2.648 | -1.979 |
| glycerol | -0.167 | 2.127 |
| cholesterol | -1.3 | -0.647 |
| AJ | -0.425 | -0.881 |
| Bibs02 | -0.539 | -1.592 |
| Bibs02c | 0.144 | -1.085 |
| BL6 | 1.166 | 0.723 |
| BL6a | 0.263 | -0.626 |
| BXD01 | 0.677 | 1.029 |
| BXD010 | 0.399 | -0.486 |
| BXD011 | 0.494 | -0.569 |
| BXD03 | 0.301 | -0.92 |
| BXD04 | -0.033 | 0.426 |
| BXD05 | -0.086 | -0.602 |
| BXD06 | 0.297 | 0.059 |
| BXD07 | 0.562 | -0.064 |
| BXD08 | 0.602 | 1.986 |
| BXD09 | 0.429 | -0.36 |
| CAST | 0.12 | -1.373 |
| CCcont | 0.633 | 2.31 |
| DS01 | 0.041 | 0.205 |
| DS02 | -1.186 | 0.364 |
| DS04 | 0.417 | -0.613 |
| DS0c | 0.149 | -1.672 |
| GP01 | -1.522 | 1.651 |
| GP02 | -0.898 | -0.213 |
| GP0c | 0.27 | 0.718 |
| NOD | 0.516 | -1.339 |
| NZO | -0.224 | -1.357 |
| PWK | -0.487 | -1.169 |
| H37Rv_KO_CtpC | 0.698 | 2.408 |
| H37Rv_KO_CtpD | -0.71 | -0.976 |
| H37Rv_KO_Rv1272 | 0.476 | 0.778 |
| H37Rv_KO_SugABC | 1.505 | -0.376 |
| H37Rv_KO_MbtN | 0.399 | -0.614 |
| Trans05 | -0.325 | 0.611 |
| macrophage_unactivated | -0.436 | 2.326 |
| IL1 | -0.457 | -0.78 |
| Rapamycin | 0.74 | -0.807 |
| Tcell | 0.746 | 2.63 |
| GMCSF | 0.0 | -0.694 |
| IFNab | 0.692 | 0.0 |
| IFNg | 0.612 | -0.703 |
| IFNg_GMCSF1 | 0.984 | 1.012 |
| Rv1432_day32 | 0.073 | 0.0 |
| Rv1565c_day32 | 1.264 | 0.0 |
| secA2_input | -0.454 | -0.247 |
| delta_Rv3594 | 0.26 | 0.369 |
| delta_Rv3717 | -0.216 | -0.174 |
| delta_Rv3811 | 0.229 | 0.805 |
| delta_Rv0954 | 1.689 | 1.455 |
| PonA1 | -0.223 | 0.212 |
| EccD1_KO | 1.246 | 0.25 |
| EspI_KO | 0.633 | 1.777 |
| PE35_KO | 0.648 | 0.0 |
| PPE68_KO | 0.486 | 0.586 |
| glycerol2 | 0.736 | 3.113 |
| lignocerate | 1.136 | 3.78 |
| oleate | 0.469 | -0.829 |
| phosphatidylcholine | 0.958 | 2.899 |
| acetate | 1.589 | 4.666 |
| glucAc | 1.487 | 3.978 |
| Rv0950ko | -0.543 | -0.09 |
| Rv1096ko | 0.154 | 0.0 |
| Rv3684ko | -1.431 | -0.96 |
| delta_otsA_trehalose | -1.061 | 0.0 |