Top 10 genes with highest correlation to Rv3234c/tgs3:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1425/- | (cc=0.4644) | info on Rv1425/- |
| Rv1249c/- | (cc=0.4583) | info on Rv1249c/- |
| Rv2405/- | (cc=0.449) | info on Rv2405/- |
| Rv0869c/moaA2 | (cc=0.4471) | info on Rv0869c/moaA2 |
| Rv3390/lpqD | (cc=0.4406) | info on Rv3390/lpqD |
| Rv1927/- | (cc=0.4393) | info on Rv1927/- |
| Rv0261c/narK3 | (cc=0.4387) | info on Rv0261c/narK3 |
| Rv3440c/- | (cc=0.4375) | info on Rv3440c/- |
| Rv0264c/- | (cc=0.4347) | info on Rv0264c/- |
| Rv2579/dhaA | (cc=0.4318) | info on Rv2579/dhaA |
Correlation of Rv3234c/tgs3 with Rv1249c/-
Normalized LFCs for Rv3234c/tgs3:
(description and provenance of datasets)
| Rv3234c/tgs3 | Rv1249c/- | |
| Fe_supp_jason_reseq | -0.328 | -0.041 |
| low_pH_jason_reseq | -0.397 | -1.241 |
| NO_jason_reseq | -0.326 | -0.809 |
| B6_jason_reseq | 0.0 | 0.178 |
| MHCII_jason_reseq | 0.148 | -0.072 |
| Isoniazid02 | -0.314 | 0.703 |
| Rifampicin4 | 0.403 | 0.579 |
| Ethambutol3 | 0.531 | 1.188 |
| Meropenem3 | 1.152 | 0.412 |
| Vancomycin16 | 0.215 | 0.276 |
| Rv2680_day32 | 0.77 | 0.482 |
| H37Rv_KO_MarP | 0.034 | 0.492 |
| hypoxia_3wks | 0.0 | 0.411 |
| hypoxia_6wks | 0.516 | 0.447 |
| glycerol | -0.255 | 0.402 |
| cholesterol | 0.093 | 0.382 |
| AJ | 0.166 | 0.224 |
| Bibs02 | -0.581 | -0.351 |
| Bibs02c | 0.383 | -0.493 |
| BL6 | -0.009 | -0.042 |
| BL6a | 0.356 | -0.445 |
| BXD01 | -0.231 | -0.466 |
| BXD010 | 0.009 | -0.05 |
| BXD011 | -0.221 | -0.828 |
| BXD03 | -0.216 | -0.385 |
| BXD04 | -0.085 | -0.637 |
| BXD05 | -0.414 | -0.156 |
| BXD06 | -0.081 | -0.266 |
| BXD07 | -0.01 | -0.373 |
| BXD08 | 0.005 | -0.374 |
| BXD09 | 0.244 | -0.39 |
| CAST | 0.157 | 0.349 |
| CCcont | -0.045 | -0.314 |
| DS01 | 0.043 | 0.216 |
| DS02 | 0.309 | 0.05 |
| DS04 | -0.134 | 0.294 |
| DS0c | -0.159 | 0.607 |
| GP01 | -0.856 | -0.243 |
| GP02 | 1.097 | 0.941 |
| GP0c | -0.148 | -0.651 |
| NOD | 0.145 | 0.098 |
| NZO | -0.21 | -0.477 |
| PWK | 0.092 | -0.084 |
| H37Rv_KO_CtpC | 0.111 | 0.48 |
| H37Rv_KO_CtpD | -0.899 | -0.271 |
| H37Rv_KO_Rv1272 | 0.669 | -0.221 |
| H37Rv_KO_SugABC | 0.014 | -0.482 |
| H37Rv_KO_MbtN | 0.16 | -0.62 |
| Trans05 | 0.084 | 0.144 |
| macrophage_unactivated | 0.366 | 0.395 |
| IL1 | 0.543 | 0.0 |
| Rapamycin | 0.341 | -0.743 |
| Tcell | 0.235 | 0.241 |
| GMCSF | -0.304 | -0.116 |
| IFNab | 0.336 | -0.166 |
| IFNg | 0.166 | 0.615 |
| IFNg_GMCSF1 | 0.321 | 0.531 |
| Rv1432_day32 | 0.494 | 0.529 |
| Rv1565c_day32 | 0.171 | 0.403 |
| secA2_input | 0.146 | -0.814 |
| delta_Rv3594 | -0.185 | -0.783 |
| delta_Rv3717 | -0.074 | -1.08 |
| delta_Rv3811 | -0.443 | -0.986 |
| delta_Rv0954 | 0.067 | -0.857 |
| PonA1 | -0.594 | -0.629 |
| EccD1_KO | -0.74 | -0.497 |
| EspI_KO | -0.351 | 0.177 |
| PE35_KO | -0.152 | -0.368 |
| PPE68_KO | -0.416 | 0.25 |
| glycerol2 | 0.893 | -0.123 |
| lignocerate | 0.788 | 1.066 |
| oleate | 0.73 | 0.647 |
| phosphatidylcholine | 0.779 | 1.207 |
| acetate | 0.401 | 0.234 |
| glucAc | 0.4 | 0.151 |
| Rv0950ko | 0.808 | -0.283 |
| Rv1096ko | 0.28 | -0.449 |
| Rv3684ko | 0.37 | -0.167 |
| delta_otsA_trehalose | -0.768 | -0.094 |