TnSeqCorr

Top 10 genes with highest correlation to Rv3234c/tgs3:

update plotcorrelationlink to info on gene
Rv1425/- (cc=0.4644) info on Rv1425/-
Rv1249c/- (cc=0.4583) info on Rv1249c/-
Rv2405/- (cc=0.449) info on Rv2405/-
Rv0869c/moaA2 (cc=0.4471) info on Rv0869c/moaA2
Rv3390/lpqD (cc=0.4406) info on Rv3390/lpqD
Rv1927/- (cc=0.4393) info on Rv1927/-
Rv0261c/narK3 (cc=0.4387) info on Rv0261c/narK3
Rv3440c/- (cc=0.4375) info on Rv3440c/-
Rv0264c/- (cc=0.4347) info on Rv0264c/-
Rv2579/dhaA (cc=0.4318) info on Rv2579/dhaA

Correlation of Rv3234c/tgs3 with Rv0261c/narK3

Normalized LFCs for Rv3234c/tgs3:
(description and provenance of datasets)
Rv3234c/tgs3Rv0261c/narK3
Fe_supp_jason_reseq

-0.328

-1.435

low_pH_jason_reseq

-0.397

0.273

NO_jason_reseq

-0.326

-0.213

B6_jason_reseq

0.0

-0.184

MHCII_jason_reseq

0.148

0.374

Isoniazid02

-0.314

0.406

Rifampicin4

0.403

-0.623

Ethambutol3

0.531

-0.058

Meropenem3

1.152

0.0

Vancomycin16

0.215

0.358

Rv2680_day32

0.77

-0.267

H37Rv_KO_MarP

0.034

0.0

hypoxia_3wks

0.0

-0.574

hypoxia_6wks

0.516

-0.186

glycerol

-0.255

-0.551

cholesterol

0.093

-0.246

AJ

0.166

-0.899

Bibs02

-0.581

0.736

Bibs02c

0.383

-0.781

BL6

-0.009

0.039

BL6a

0.356

-0.957

BXD01

-0.231

-0.159

BXD010

0.009

-0.458

BXD011

-0.221

-0.233

BXD03

-0.216

-0.722

BXD04

-0.085

0.225

BXD05

-0.414

-0.65

BXD06

-0.081

-0.147

BXD07

-0.01

-0.219

BXD08

0.005

0.526

BXD09

0.244

-0.205

CAST

0.157

0.072

CCcont

-0.045

-0.147

DS01

0.043

0.098

DS02

0.309

-0.14

DS04

-0.134

0.06

DS0c

-0.159

-0.214

GP01

-0.856

0.0

GP02

1.097

0.567

GP0c

-0.148

-0.409

NOD

0.145

-0.553

NZO

-0.21

-0.6

PWK

0.092

0.215

H37Rv_KO_CtpC

0.111

0.131

H37Rv_KO_CtpD

-0.899

-1.086

H37Rv_KO_Rv1272

0.669

0.398

H37Rv_KO_SugABC

0.014

0.041

H37Rv_KO_MbtN

0.16

-0.836

Trans05

0.084

0.359

macrophage_unactivated

0.366

0.129

IL1

0.543

-0.19

Rapamycin

0.341

-0.62

Tcell

0.235

0.199

GMCSF

-0.304

-0.795

IFNab

0.336

-0.611

IFNg

0.166

0.714

IFNg_GMCSF1

0.321

0.255

Rv1432_day32

0.494

0.441

Rv1565c_day32

0.171

1.188

secA2_input

0.146

-0.116

delta_Rv3594

-0.185

-0.373

delta_Rv3717

-0.074

-0.892

delta_Rv3811

-0.443

-0.596

delta_Rv0954

0.067

-1.424

PonA1

-0.594

-0.873

EccD1_KO

-0.74

-1.105

EspI_KO

-0.351

-0.759

PE35_KO

-0.152

-0.438

PPE68_KO

-0.416

-0.234

glycerol2

0.893

1.006

lignocerate

0.788

1.456

oleate

0.73

0.496

phosphatidylcholine

0.779

1.248

acetate

0.401

0.582

glucAc

0.4

0.637

Rv0950ko

0.808

-0.163

Rv1096ko

0.28

0.863

Rv3684ko

0.37

0.596

delta_otsA_trehalose

-0.768

-0.247