Top 10 genes with highest correlation to Rv3234c/tgs3:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1425/- | (cc=0.4644) | info on Rv1425/- |
| Rv1249c/- | (cc=0.4583) | info on Rv1249c/- |
| Rv2405/- | (cc=0.449) | info on Rv2405/- |
| Rv0869c/moaA2 | (cc=0.4471) | info on Rv0869c/moaA2 |
| Rv3390/lpqD | (cc=0.4406) | info on Rv3390/lpqD |
| Rv1927/- | (cc=0.4393) | info on Rv1927/- |
| Rv0261c/narK3 | (cc=0.4387) | info on Rv0261c/narK3 |
| Rv3440c/- | (cc=0.4375) | info on Rv3440c/- |
| Rv0264c/- | (cc=0.4347) | info on Rv0264c/- |
| Rv2579/dhaA | (cc=0.4318) | info on Rv2579/dhaA |
Correlation of Rv3234c/tgs3 with Rv1425/-
Normalized LFCs for Rv3234c/tgs3:
(description and provenance of datasets)
| Rv3234c/tgs3 | Rv1425/- | |
| Fe_supp_jason_reseq | -0.328 | 0.054 |
| low_pH_jason_reseq | -0.397 | -0.119 |
| NO_jason_reseq | -0.326 | -0.168 |
| B6_jason_reseq | 0.0 | 0.634 |
| MHCII_jason_reseq | 0.148 | 0.73 |
| Isoniazid02 | -0.314 | 1.234 |
| Rifampicin4 | 0.403 | -0.087 |
| Ethambutol3 | 0.531 | 0.061 |
| Meropenem3 | 1.152 | 0.817 |
| Vancomycin16 | 0.215 | 0.085 |
| Rv2680_day32 | 0.77 | 0.043 |
| H37Rv_KO_MarP | 0.034 | 0.236 |
| hypoxia_3wks | 0.0 | -0.263 |
| hypoxia_6wks | 0.516 | -0.56 |
| glycerol | -0.255 | -0.591 |
| cholesterol | 0.093 | 0.012 |
| AJ | 0.166 | 0.123 |
| Bibs02 | -0.581 | -0.11 |
| Bibs02c | 0.383 | -0.27 |
| BL6 | -0.009 | -0.246 |
| BL6a | 0.356 | -0.775 |
| BXD01 | -0.231 | 0.297 |
| BXD010 | 0.009 | -0.432 |
| BXD011 | -0.221 | -0.176 |
| BXD03 | -0.216 | -0.488 |
| BXD04 | -0.085 | 0.021 |
| BXD05 | -0.414 | -0.328 |
| BXD06 | -0.081 | 0.039 |
| BXD07 | -0.01 | -0.152 |
| BXD08 | 0.005 | 0.163 |
| BXD09 | 0.244 | -0.395 |
| CAST | 0.157 | -0.489 |
| CCcont | -0.045 | -0.25 |
| DS01 | 0.043 | 0.05 |
| DS02 | 0.309 | 0.46 |
| DS04 | -0.134 | 0.416 |
| DS0c | -0.159 | 0.09 |
| GP01 | -0.856 | -0.038 |
| GP02 | 1.097 | 1.025 |
| GP0c | -0.148 | -0.199 |
| NOD | 0.145 | 0.163 |
| NZO | -0.21 | 0.295 |
| PWK | 0.092 | 0.276 |
| H37Rv_KO_CtpC | 0.111 | -0.328 |
| H37Rv_KO_CtpD | -0.899 | 0.169 |
| H37Rv_KO_Rv1272 | 0.669 | 0.747 |
| H37Rv_KO_SugABC | 0.014 | -0.2 |
| H37Rv_KO_MbtN | 0.16 | -0.224 |
| Trans05 | 0.084 | 0.532 |
| macrophage_unactivated | 0.366 | -0.107 |
| IL1 | 0.543 | -0.05 |
| Rapamycin | 0.341 | 0.276 |
| Tcell | 0.235 | -0.14 |
| GMCSF | -0.304 | 0.045 |
| IFNab | 0.336 | -0.348 |
| IFNg | 0.166 | -0.233 |
| IFNg_GMCSF1 | 0.321 | -0.135 |
| Rv1432_day32 | 0.494 | 0.0 |
| Rv1565c_day32 | 0.171 | 0.377 |
| secA2_input | 0.146 | -0.027 |
| delta_Rv3594 | -0.185 | -0.119 |
| delta_Rv3717 | -0.074 | -0.395 |
| delta_Rv3811 | -0.443 | -0.412 |
| delta_Rv0954 | 0.067 | 0.58 |
| PonA1 | -0.594 | -0.488 |
| EccD1_KO | -0.74 | -0.526 |
| EspI_KO | -0.351 | -0.753 |
| PE35_KO | -0.152 | -0.312 |
| PPE68_KO | -0.416 | -1.008 |
| glycerol2 | 0.893 | 0.996 |
| lignocerate | 0.788 | 1.223 |
| oleate | 0.73 | 0.896 |
| phosphatidylcholine | 0.779 | 1.389 |
| acetate | 0.401 | 0.68 |
| glucAc | 0.4 | 0.474 |
| Rv0950ko | 0.808 | -0.277 |
| Rv1096ko | 0.28 | -0.229 |
| Rv3684ko | 0.37 | -0.098 |
| delta_otsA_trehalose | -0.768 | -0.628 |