Top 10 genes with highest correlation to Rv3200c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2691/ceoB | (cc=0.7262) | info on Rv2691/ceoB |
| Rv2694c/- | (cc=0.6311) | info on Rv2694c/- |
| Rv2692/ceoC | (cc=0.6216) | info on Rv2692/ceoC |
| Rv2690c/- | (cc=0.5603) | info on Rv2690c/- |
| Rv2946c/pks1 | (cc=0.5456) | info on Rv2946c/pks1 |
| Rv2942/mmpL7 | (cc=0.5231) | info on Rv2942/mmpL7 |
| Rv1421/- | (cc=0.515) | info on Rv1421/- |
| Rv1420/uvrC | (cc=0.5111) | info on Rv1420/uvrC |
| Rv1364c/- | (cc=0.4844) | info on Rv1364c/- |
| Rv0019c/fhaB | (cc=0.48) | info on Rv0019c/fhaB |
Correlation of Rv3200c/- with Rv1420/uvrC
Normalized LFCs for Rv3200c/-:
(description and provenance of datasets)
| Rv3200c/- | Rv1420/uvrC | |
| Fe_supp_jason_reseq | 2.104 | 1.773 |
| low_pH_jason_reseq | 0.811 | 0.085 |
| NO_jason_reseq | -3.108 | -1.467 |
| B6_jason_reseq | -0.929 | -0.799 |
| MHCII_jason_reseq | -0.818 | -0.217 |
| Isoniazid02 | 0.627 | -0.457 |
| Rifampicin4 | 2.226 | 0.699 |
| Ethambutol3 | 0.123 | -1.07 |
| Meropenem3 | -0.144 | -0.522 |
| Vancomycin16 | 2.069 | 0.162 |
| Rv2680_day32 | -1.066 | 0.222 |
| H37Rv_KO_MarP | -2.822 | -2.503 |
| hypoxia_3wks | 0.794 | 0.949 |
| hypoxia_6wks | 2.998 | 0.867 |
| glycerol | -0.633 | 0.136 |
| cholesterol | 2.534 | 0.711 |
| AJ | -0.728 | -0.541 |
| Bibs02 | 0.703 | 1.827 |
| Bibs02c | 0.505 | 0.399 |
| BL6 | -0.684 | 0.816 |
| BL6a | 0.595 | 1.291 |
| BXD01 | -0.478 | 1.666 |
| BXD010 | -0.543 | -0.191 |
| BXD011 | -0.05 | 1.128 |
| BXD03 | 0.284 | 1.157 |
| BXD04 | -0.048 | -0.09 |
| BXD05 | -0.354 | 0.539 |
| BXD06 | 0.05 | 0.92 |
| BXD07 | -0.054 | 0.555 |
| BXD08 | -0.488 | 0.653 |
| BXD09 | -0.769 | 0.916 |
| CAST | -0.976 | -0.976 |
| CCcont | 1.552 | 2.214 |
| DS01 | 1.665 | -0.171 |
| DS02 | 0.717 | -0.922 |
| DS04 | 1.903 | 0.777 |
| DS0c | 0.652 | 0.652 |
| GP01 | 0.38 | -0.147 |
| GP02 | -0.455 | 0.292 |
| GP0c | 0.049 | 0.748 |
| NOD | -1.38 | -0.524 |
| NZO | -1.691 | 0.0 |
| PWK | -0.158 | -0.293 |
| H37Rv_KO_CtpC | 0.75 | 1.232 |
| H37Rv_KO_CtpD | 0.52 | 0.381 |
| H37Rv_KO_Rv1272 | 1.294 | 1.409 |
| H37Rv_KO_SugABC | 1.711 | 1.015 |
| H37Rv_KO_MbtN | 2.884 | 1.942 |
| Trans05 | 0.274 | 1.847 |
| macrophage_unactivated | 1.812 | 0.253 |
| IL1 | -0.836 | -0.658 |
| Rapamycin | -0.522 | 0.7 |
| Tcell | 2.463 | 1.769 |
| GMCSF | -0.264 | -0.224 |
| IFNab | 1.735 | 2.276 |
| IFNg | -0.754 | 0.882 |
| IFNg_GMCSF1 | -1.141 | 0.716 |
| Rv1432_day32 | -2.154 | -0.568 |
| Rv1565c_day32 | 2.159 | 0.873 |
| secA2_input | -3.604 | 0.276 |
| delta_Rv3594 | 2.236 | 1.398 |
| delta_Rv3717 | 2.162 | 1.754 |
| delta_Rv3811 | 2.229 | 1.895 |
| delta_Rv0954 | 0.336 | 0.282 |
| PonA1 | 0.0 | 0.284 |
| EccD1_KO | -1.161 | -1.582 |
| EspI_KO | -0.031 | -1.124 |
| PE35_KO | 0.825 | 0.184 |
| PPE68_KO | 0.176 | -0.586 |
| glycerol2 | 0.13 | -1.574 |
| lignocerate | -0.122 | -1.959 |
| oleate | 0.784 | -2.181 |
| phosphatidylcholine | -0.289 | -2.06 |
| acetate | 0.155 | -0.248 |
| glucAc | -0.213 | -0.238 |
| Rv0950ko | -0.507 | -1.288 |
| Rv1096ko | 1.936 | -0.057 |
| Rv3684ko | -0.242 | -0.445 |
| delta_otsA_trehalose | -0.346 | 1.089 |