Top 10 genes with highest correlation to Rv3200c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2691/ceoB | (cc=0.7262) | info on Rv2691/ceoB |
| Rv2694c/- | (cc=0.6311) | info on Rv2694c/- |
| Rv2692/ceoC | (cc=0.6216) | info on Rv2692/ceoC |
| Rv2690c/- | (cc=0.5603) | info on Rv2690c/- |
| Rv2946c/pks1 | (cc=0.5456) | info on Rv2946c/pks1 |
| Rv2942/mmpL7 | (cc=0.5231) | info on Rv2942/mmpL7 |
| Rv1421/- | (cc=0.515) | info on Rv1421/- |
| Rv1420/uvrC | (cc=0.5111) | info on Rv1420/uvrC |
| Rv1364c/- | (cc=0.4844) | info on Rv1364c/- |
| Rv0019c/fhaB | (cc=0.48) | info on Rv0019c/fhaB |
Correlation of Rv3200c/- with Rv2691/ceoB
Normalized LFCs for Rv3200c/-:
(description and provenance of datasets)
| Rv3200c/- | Rv2691/ceoB | |
| Fe_supp_jason_reseq | 2.104 | 1.026 |
| low_pH_jason_reseq | 0.811 | 0.301 |
| NO_jason_reseq | -3.108 | -6.0 |
| B6_jason_reseq | -0.929 | -0.992 |
| MHCII_jason_reseq | -0.818 | 0.56 |
| Isoniazid02 | 0.627 | 0.953 |
| Rifampicin4 | 2.226 | 2.477 |
| Ethambutol3 | 0.123 | 0.209 |
| Meropenem3 | -0.144 | 0.964 |
| Vancomycin16 | 2.069 | 3.672 |
| Rv2680_day32 | -1.066 | -1.619 |
| H37Rv_KO_MarP | -2.822 | -1.672 |
| hypoxia_3wks | 0.794 | -2.349 |
| hypoxia_6wks | 2.998 | 4.402 |
| glycerol | -0.633 | 0.209 |
| cholesterol | 2.534 | 3.009 |
| AJ | -0.728 | -1.192 |
| Bibs02 | 0.703 | 1.628 |
| Bibs02c | 0.505 | 1.776 |
| BL6 | -0.684 | 1.907 |
| BL6a | 0.595 | 1.669 |
| BXD01 | -0.478 | 0.387 |
| BXD010 | -0.543 | 1.006 |
| BXD011 | -0.05 | 0.961 |
| BXD03 | 0.284 | 1.239 |
| BXD04 | -0.048 | 0.952 |
| BXD05 | -0.354 | 1.251 |
| BXD06 | 0.05 | 1.068 |
| BXD07 | -0.054 | 0.844 |
| BXD08 | -0.488 | 0.119 |
| BXD09 | -0.769 | 0.349 |
| CAST | -0.976 | -1.855 |
| CCcont | 1.552 | 1.939 |
| DS01 | 1.665 | 3.181 |
| DS02 | 0.717 | 3.362 |
| DS04 | 1.903 | 2.67 |
| DS0c | 0.652 | 2.654 |
| GP01 | 0.38 | 0.557 |
| GP02 | -0.455 | -1.009 |
| GP0c | 0.049 | 1.216 |
| NOD | -1.38 | -1.041 |
| NZO | -1.691 | -3.12 |
| PWK | -0.158 | -1.007 |
| H37Rv_KO_CtpC | 0.75 | 1.214 |
| H37Rv_KO_CtpD | 0.52 | 0.975 |
| H37Rv_KO_Rv1272 | 1.294 | 1.065 |
| H37Rv_KO_SugABC | 1.711 | 1.343 |
| H37Rv_KO_MbtN | 2.884 | 2.285 |
| Trans05 | 0.274 | 1.547 |
| macrophage_unactivated | 1.812 | 1.215 |
| IL1 | -0.836 | -1.323 |
| Rapamycin | -0.522 | -0.681 |
| Tcell | 2.463 | 0.443 |
| GMCSF | -0.264 | -0.502 |
| IFNab | 1.735 | 1.164 |
| IFNg | -0.754 | -0.941 |
| IFNg_GMCSF1 | -1.141 | -2.055 |
| Rv1432_day32 | -2.154 | -1.536 |
| Rv1565c_day32 | 2.159 | 1.857 |
| secA2_input | -3.604 | -1.497 |
| delta_Rv3594 | 2.236 | 1.106 |
| delta_Rv3717 | 2.162 | 0.997 |
| delta_Rv3811 | 2.229 | 0.495 |
| delta_Rv0954 | 0.336 | -0.236 |
| PonA1 | 0.0 | -0.036 |
| EccD1_KO | -1.161 | 0.25 |
| EspI_KO | -0.031 | 0.499 |
| PE35_KO | 0.825 | 0.397 |
| PPE68_KO | 0.176 | 0.928 |
| glycerol2 | 0.13 | -0.929 |
| lignocerate | -0.122 | -1.128 |
| oleate | 0.784 | 0.301 |
| phosphatidylcholine | -0.289 | -1.297 |
| acetate | 0.155 | 0.123 |
| glucAc | -0.213 | 0.409 |
| Rv0950ko | -0.507 | -0.754 |
| Rv1096ko | 1.936 | 1.001 |
| Rv3684ko | -0.242 | -0.819 |
| delta_otsA_trehalose | -0.346 | 1.391 |