Top 10 genes with highest correlation to Rv3188/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0691c/- | (cc=0.4375) | info on Rv0691c/- |
| Rv2800/- | (cc=0.4268) | info on Rv2800/- |
| Rv2310/- | (cc=0.424) | info on Rv2310/- |
| Rv0892/- | (cc=0.4136) | info on Rv0892/- |
| Rv1566c/- | (cc=0.4062) | info on Rv1566c/- |
| Rv2938/drrC | (cc=0.3902) | info on Rv2938/drrC |
| Rv2306B/- | (cc=0.3876) | info on Rv2306B/- |
| Rv1585c/- | (cc=0.384) | info on Rv1585c/- |
| Rv0798c/cfp29 | (cc=0.3831) | info on Rv0798c/cfp29 |
| Rv2957/- | (cc=0.3756) | info on Rv2957/- |
Correlation of Rv3188/- with Rv1566c/-
Normalized LFCs for Rv3188/-:
(description and provenance of datasets)
| Rv3188/- | Rv1566c/- | |
| Fe_supp_jason_reseq | 0.395 | 2.439 |
| low_pH_jason_reseq | 0.611 | 0.775 |
| NO_jason_reseq | -0.139 | -0.32 |
| B6_jason_reseq | 0.151 | -1.245 |
| MHCII_jason_reseq | 1.439 | 0.996 |
| Isoniazid02 | -0.134 | 0.936 |
| Rifampicin4 | -0.677 | -2.255 |
| Ethambutol3 | -0.016 | -1.097 |
| Meropenem3 | -0.031 | -1.109 |
| Vancomycin16 | -0.393 | -4.985 |
| Rv2680_day32 | -0.21 | -2.019 |
| H37Rv_KO_MarP | 0.12 | -2.066 |
| hypoxia_3wks | 0.223 | -0.08 |
| hypoxia_6wks | -0.184 | -1.566 |
| glycerol | -0.518 | -0.566 |
| cholesterol | 0.268 | 0.32 |
| AJ | 0.38 | -0.948 |
| Bibs02 | -0.837 | -0.057 |
| Bibs02c | 1.088 | 1.417 |
| BL6 | 0.917 | 0.423 |
| BL6a | 0.915 | 0.918 |
| BXD01 | 0.476 | 0.411 |
| BXD010 | 0.255 | 0.826 |
| BXD011 | 0.443 | 0.513 |
| BXD03 | 0.683 | 0.12 |
| BXD04 | 1.355 | 1.105 |
| BXD05 | -0.33 | 0.845 |
| BXD06 | 0.862 | -0.322 |
| BXD07 | 0.246 | 0.306 |
| BXD08 | -0.415 | 0.294 |
| BXD09 | 0.023 | 1.101 |
| CAST | -0.47 | -1.278 |
| CCcont | 0.93 | 2.871 |
| DS01 | 1.324 | 0.0 |
| DS02 | 0.945 | 0.0 |
| DS04 | 0.687 | -0.544 |
| DS0c | 0.52 | 0.066 |
| GP01 | -0.427 | -0.715 |
| GP02 | -1.837 | -0.169 |
| GP0c | -0.033 | -0.474 |
| NOD | 2.211 | -0.63 |
| NZO | -2.208 | -1.849 |
| PWK | -0.924 | -1.819 |
| H37Rv_KO_CtpC | 0.515 | 1.074 |
| H37Rv_KO_CtpD | 1.259 | 1.713 |
| H37Rv_KO_Rv1272 | -0.288 | -0.044 |
| H37Rv_KO_SugABC | 0.608 | 1.792 |
| H37Rv_KO_MbtN | 0.87 | 0.778 |
| Trans05 | 0.59 | 0.631 |
| macrophage_unactivated | 2.058 | 1.294 |
| IL1 | 0.332 | -1.231 |
| Rapamycin | 0.055 | -0.178 |
| Tcell | -0.27 | -1.437 |
| GMCSF | -0.615 | -0.481 |
| IFNab | -0.426 | 0.278 |
| IFNg | -1.264 | -0.604 |
| IFNg_GMCSF1 | -0.352 | -0.374 |
| Rv1432_day32 | -0.961 | -0.824 |
| Rv1565c_day32 | -0.264 | 0.442 |
| secA2_input | 0.141 | -0.809 |
| delta_Rv3594 | -0.271 | -0.038 |
| delta_Rv3717 | -0.035 | 0.211 |
| delta_Rv3811 | -0.87 | 0.152 |
| delta_Rv0954 | -0.283 | 0.986 |
| PonA1 | -1.929 | -0.219 |
| EccD1_KO | 1.687 | -0.148 |
| EspI_KO | 0.074 | -0.331 |
| PE35_KO | 1.444 | -0.201 |
| PPE68_KO | 1.901 | 0.454 |
| glycerol2 | 0.06 | -1.534 |
| lignocerate | 0.789 | -0.177 |
| oleate | 0.024 | -2.406 |
| phosphatidylcholine | 0.584 | -1.401 |
| acetate | 0.141 | 0.311 |
| glucAc | 1.043 | 0.207 |
| Rv0950ko | -0.727 | -3.673 |
| Rv1096ko | 0.555 | -0.283 |
| Rv3684ko | 0.082 | 0.455 |
| delta_otsA_trehalose | -1.196 | -0.562 |