Top 10 genes with highest correlation to Rv3087/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1135c/PPE16 | (cc=0.5028) | info on Rv1135c/PPE16 |
| Rv0992c/- | (cc=0.4877) | info on Rv0992c/- |
| Rv1969/mce3D | (cc=0.4801) | info on Rv1969/mce3D |
| Rv1071c/echA9 | (cc=0.4784) | info on Rv1071c/echA9 |
| Rv2287/yjcE | (cc=0.4766) | info on Rv2287/yjcE |
| Rv3180c/- | (cc=0.462) | info on Rv3180c/- |
| Rv1735c/- | (cc=0.4451) | info on Rv1735c/- |
| Rv0687/- | (cc=0.4407) | info on Rv0687/- |
| Rv3056/dinP | (cc=0.4304) | info on Rv3056/dinP |
| Rv1356c/- | (cc=0.4296) | info on Rv1356c/- |
Correlation of Rv3087/- with Rv3180c/-
Normalized LFCs for Rv3087/-:
(description and provenance of datasets)
| Rv3087/- | Rv3180c/- | |
| Fe_supp_jason_reseq | -1.351 | -1.722 |
| low_pH_jason_reseq | -1.103 | -0.51 |
| NO_jason_reseq | 0.176 | 0.572 |
| B6_jason_reseq | -0.435 | -0.272 |
| MHCII_jason_reseq | -0.358 | 1.065 |
| Isoniazid02 | 0.074 | 0.908 |
| Rifampicin4 | 1.118 | 1.134 |
| Ethambutol3 | -0.109 | 0.601 |
| Meropenem3 | 0.728 | 0.962 |
| Vancomycin16 | 0.414 | 0.191 |
| Rv2680_day32 | 0.325 | 0.503 |
| H37Rv_KO_MarP | 0.313 | 0.49 |
| hypoxia_3wks | -0.989 | -0.335 |
| hypoxia_6wks | -1.029 | -0.395 |
| glycerol | -0.067 | 0.562 |
| cholesterol | -0.019 | -0.602 |
| AJ | -0.237 | -0.536 |
| Bibs02 | -1.111 | 0.429 |
| Bibs02c | -0.183 | 0.682 |
| BL6 | -0.155 | -0.55 |
| BL6a | -0.364 | -0.08 |
| BXD01 | -0.47 | -0.097 |
| BXD010 | -0.855 | -1.343 |
| BXD011 | -0.982 | -0.576 |
| BXD03 | -0.347 | -2.341 |
| BXD04 | -0.358 | -1.41 |
| BXD05 | -0.473 | -0.693 |
| BXD06 | -0.78 | -1.69 |
| BXD07 | -0.794 | -0.696 |
| BXD08 | 0.147 | 0.588 |
| BXD09 | -0.759 | -0.312 |
| CAST | -0.853 | -0.355 |
| CCcont | -0.682 | -0.189 |
| DS01 | -0.207 | 0.878 |
| DS02 | 0.583 | 1.289 |
| DS04 | 0.215 | 1.244 |
| DS0c | 0.096 | 1.648 |
| GP01 | -0.647 | -0.483 |
| GP02 | -0.068 | -1.123 |
| GP0c | -0.096 | -0.739 |
| NOD | 0.249 | -1.645 |
| NZO | -0.12 | -0.461 |
| PWK | -0.637 | -1.199 |
| H37Rv_KO_CtpC | 0.507 | -1.931 |
| H37Rv_KO_CtpD | -0.325 | 0.618 |
| H37Rv_KO_Rv1272 | -0.175 | -1.01 |
| H37Rv_KO_SugABC | 0.013 | -1.526 |
| H37Rv_KO_MbtN | -0.502 | -1.828 |
| Trans05 | 0.557 | 0.091 |
| macrophage_unactivated | -0.208 | 0.174 |
| IL1 | -1.284 | -3.135 |
| Rapamycin | -1.418 | 0.169 |
| Tcell | 1.166 | -0.45 |
| GMCSF | -1.378 | -3.72 |
| IFNab | -1.179 | -3.196 |
| IFNg | -0.297 | -1.227 |
| IFNg_GMCSF1 | -0.207 | -1.056 |
| Rv1432_day32 | -0.383 | 0.0 |
| Rv1565c_day32 | 0.896 | 0.927 |
| secA2_input | 0.762 | -0.473 |
| delta_Rv3594 | 0.127 | 0.561 |
| delta_Rv3717 | 0.374 | 0.0 |
| delta_Rv3811 | 0.626 | 0.981 |
| delta_Rv0954 | 0.521 | 1.078 |
| PonA1 | 0.496 | 0.515 |
| EccD1_KO | 0.217 | -0.401 |
| EspI_KO | 0.157 | -0.69 |
| PE35_KO | -0.268 | -1.706 |
| PPE68_KO | -0.074 | -1.705 |
| glycerol2 | -0.503 | 0.074 |
| lignocerate | -0.108 | -0.09 |
| oleate | -0.493 | 0.373 |
| phosphatidylcholine | -0.176 | 0.368 |
| acetate | -0.256 | 0.256 |
| glucAc | -0.282 | 0.392 |
| Rv0950ko | -0.944 | 0.479 |
| Rv1096ko | 0.133 | 1.668 |
| Rv3684ko | -0.187 | 0.468 |
| delta_otsA_trehalose | -0.042 | -0.915 |