Top 10 genes with highest correlation to Rv3087/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1135c/PPE16 | (cc=0.5028) | info on Rv1135c/PPE16 |
| Rv0992c/- | (cc=0.4877) | info on Rv0992c/- |
| Rv1969/mce3D | (cc=0.4801) | info on Rv1969/mce3D |
| Rv1071c/echA9 | (cc=0.4784) | info on Rv1071c/echA9 |
| Rv2287/yjcE | (cc=0.4766) | info on Rv2287/yjcE |
| Rv3180c/- | (cc=0.462) | info on Rv3180c/- |
| Rv1735c/- | (cc=0.4451) | info on Rv1735c/- |
| Rv0687/- | (cc=0.4407) | info on Rv0687/- |
| Rv3056/dinP | (cc=0.4304) | info on Rv3056/dinP |
| Rv1356c/- | (cc=0.4296) | info on Rv1356c/- |
Correlation of Rv3087/- with Rv3056/dinP
Normalized LFCs for Rv3087/-:
(description and provenance of datasets)
| Rv3087/- | Rv3056/dinP | |
| Fe_supp_jason_reseq | -1.351 | -0.327 |
| low_pH_jason_reseq | -1.103 | -1.154 |
| NO_jason_reseq | 0.176 | -0.218 |
| B6_jason_reseq | -0.435 | 0.0 |
| MHCII_jason_reseq | -0.358 | 0.432 |
| Isoniazid02 | 0.074 | 0.92 |
| Rifampicin4 | 1.118 | 0.084 |
| Ethambutol3 | -0.109 | 1.536 |
| Meropenem3 | 0.728 | 0.037 |
| Vancomycin16 | 0.414 | -0.236 |
| Rv2680_day32 | 0.325 | -0.788 |
| H37Rv_KO_MarP | 0.313 | 0.779 |
| hypoxia_3wks | -0.989 | -0.275 |
| hypoxia_6wks | -1.029 | -0.925 |
| glycerol | -0.067 | -0.253 |
| cholesterol | -0.019 | -0.01 |
| AJ | -0.237 | 0.669 |
| Bibs02 | -1.111 | -0.132 |
| Bibs02c | -0.183 | -0.196 |
| BL6 | -0.155 | -0.592 |
| BL6a | -0.364 | -0.738 |
| BXD01 | -0.47 | -0.458 |
| BXD010 | -0.855 | -0.971 |
| BXD011 | -0.982 | -0.851 |
| BXD03 | -0.347 | -0.595 |
| BXD04 | -0.358 | -0.159 |
| BXD05 | -0.473 | -0.994 |
| BXD06 | -0.78 | -0.886 |
| BXD07 | -0.794 | -1.151 |
| BXD08 | 0.147 | -0.824 |
| BXD09 | -0.759 | -0.978 |
| CAST | -0.853 | -0.057 |
| CCcont | -0.682 | -0.83 |
| DS01 | -0.207 | 0.017 |
| DS02 | 0.583 | -0.326 |
| DS04 | 0.215 | 0.204 |
| DS0c | 0.096 | -0.259 |
| GP01 | -0.647 | -0.406 |
| GP02 | -0.068 | 0.283 |
| GP0c | -0.096 | -0.184 |
| NOD | 0.249 | 0.042 |
| NZO | -0.12 | 0.459 |
| PWK | -0.637 | 0.286 |
| H37Rv_KO_CtpC | 0.507 | 0.209 |
| H37Rv_KO_CtpD | -0.325 | -0.339 |
| H37Rv_KO_Rv1272 | -0.175 | -0.615 |
| H37Rv_KO_SugABC | 0.013 | 0.404 |
| H37Rv_KO_MbtN | -0.502 | 0.209 |
| Trans05 | 0.557 | -0.24 |
| macrophage_unactivated | -0.208 | -0.745 |
| IL1 | -1.284 | -1.186 |
| Rapamycin | -1.418 | -1.096 |
| Tcell | 1.166 | -0.57 |
| GMCSF | -1.378 | -1.65 |
| IFNab | -1.179 | -1.37 |
| IFNg | -0.297 | -0.799 |
| IFNg_GMCSF1 | -0.207 | 0.104 |
| Rv1432_day32 | -0.383 | -0.159 |
| Rv1565c_day32 | 0.896 | -0.03 |
| secA2_input | 0.762 | 0.371 |
| delta_Rv3594 | 0.127 | -0.242 |
| delta_Rv3717 | 0.374 | -0.21 |
| delta_Rv3811 | 0.626 | -0.062 |
| delta_Rv0954 | 0.521 | 0.784 |
| PonA1 | 0.496 | 0.435 |
| EccD1_KO | 0.217 | 1.072 |
| EspI_KO | 0.157 | 0.702 |
| PE35_KO | -0.268 | 0.26 |
| PPE68_KO | -0.074 | 0.419 |
| glycerol2 | -0.503 | 1.578 |
| lignocerate | -0.108 | 0.992 |
| oleate | -0.493 | 0.403 |
| phosphatidylcholine | -0.176 | 1.448 |
| acetate | -0.256 | 0.128 |
| glucAc | -0.282 | 0.08 |
| Rv0950ko | -0.944 | -0.289 |
| Rv1096ko | 0.133 | 0.287 |
| Rv3684ko | -0.187 | 0.537 |
| delta_otsA_trehalose | -0.042 | -0.387 |