Top 10 genes with highest correlation to Rv3087/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1135c/PPE16 | (cc=0.5028) | info on Rv1135c/PPE16 |
| Rv0992c/- | (cc=0.4877) | info on Rv0992c/- |
| Rv1969/mce3D | (cc=0.4801) | info on Rv1969/mce3D |
| Rv1071c/echA9 | (cc=0.4784) | info on Rv1071c/echA9 |
| Rv2287/yjcE | (cc=0.4766) | info on Rv2287/yjcE |
| Rv3180c/- | (cc=0.462) | info on Rv3180c/- |
| Rv1735c/- | (cc=0.4451) | info on Rv1735c/- |
| Rv0687/- | (cc=0.4407) | info on Rv0687/- |
| Rv3056/dinP | (cc=0.4304) | info on Rv3056/dinP |
| Rv1356c/- | (cc=0.4296) | info on Rv1356c/- |
Correlation of Rv3087/- with Rv1071c/echA9
Normalized LFCs for Rv3087/-:
(description and provenance of datasets)
| Rv3087/- | Rv1071c/echA9 | |
| Fe_supp_jason_reseq | -1.351 | -2.134 |
| low_pH_jason_reseq | -1.103 | -6.0 |
| NO_jason_reseq | 0.176 | -0.714 |
| B6_jason_reseq | -0.435 | -1.643 |
| MHCII_jason_reseq | -0.358 | -0.403 |
| Isoniazid02 | 0.074 | -0.38 |
| Rifampicin4 | 1.118 | 1.625 |
| Ethambutol3 | -0.109 | 2.909 |
| Meropenem3 | 0.728 | -0.565 |
| Vancomycin16 | 0.414 | 0.65 |
| Rv2680_day32 | 0.325 | -1.463 |
| H37Rv_KO_MarP | 0.313 | 0.131 |
| hypoxia_3wks | -0.989 | -2.245 |
| hypoxia_6wks | -1.029 | -1.779 |
| glycerol | -0.067 | -0.341 |
| cholesterol | -0.019 | -1.471 |
| AJ | -0.237 | -1.143 |
| Bibs02 | -1.111 | -0.359 |
| Bibs02c | -0.183 | -0.361 |
| BL6 | -0.155 | -0.587 |
| BL6a | -0.364 | -1.323 |
| BXD01 | -0.47 | -1.426 |
| BXD010 | -0.855 | -1.162 |
| BXD011 | -0.982 | -1.515 |
| BXD03 | -0.347 | -0.581 |
| BXD04 | -0.358 | -0.728 |
| BXD05 | -0.473 | -1.541 |
| BXD06 | -0.78 | -1.418 |
| BXD07 | -0.794 | -1.218 |
| BXD08 | 0.147 | -1.412 |
| BXD09 | -0.759 | -1.427 |
| CAST | -0.853 | -0.267 |
| CCcont | -0.682 | -0.661 |
| DS01 | -0.207 | 0.95 |
| DS02 | 0.583 | 1.531 |
| DS04 | 0.215 | 0.034 |
| DS0c | 0.096 | 0.484 |
| GP01 | -0.647 | -1.89 |
| GP02 | -0.068 | -2.563 |
| GP0c | -0.096 | -2.376 |
| NOD | 0.249 | -0.093 |
| NZO | -0.12 | -0.936 |
| PWK | -0.637 | -0.365 |
| H37Rv_KO_CtpC | 0.507 | 0.685 |
| H37Rv_KO_CtpD | -0.325 | -1.157 |
| H37Rv_KO_Rv1272 | -0.175 | -1.269 |
| H37Rv_KO_SugABC | 0.013 | -0.94 |
| H37Rv_KO_MbtN | -0.502 | -1.364 |
| Trans05 | 0.557 | -1.065 |
| macrophage_unactivated | -0.208 | -1.231 |
| IL1 | -1.284 | -1.658 |
| Rapamycin | -1.418 | -1.547 |
| Tcell | 1.166 | -0.674 |
| GMCSF | -1.378 | -0.771 |
| IFNab | -1.179 | -1.69 |
| IFNg | -0.297 | -2.996 |
| IFNg_GMCSF1 | -0.207 | -2.718 |
| Rv1432_day32 | -0.383 | -1.287 |
| Rv1565c_day32 | 0.896 | -0.403 |
| secA2_input | 0.762 | 0.167 |
| delta_Rv3594 | 0.127 | 0.653 |
| delta_Rv3717 | 0.374 | -0.289 |
| delta_Rv3811 | 0.626 | 0.296 |
| delta_Rv0954 | 0.521 | 0.845 |
| PonA1 | 0.496 | 0.205 |
| EccD1_KO | 0.217 | 0.398 |
| EspI_KO | 0.157 | 0.73 |
| PE35_KO | -0.268 | 0.181 |
| PPE68_KO | -0.074 | -0.138 |
| glycerol2 | -0.503 | 0.738 |
| lignocerate | -0.108 | 0.588 |
| oleate | -0.493 | 1.09 |
| phosphatidylcholine | -0.176 | 0.714 |
| acetate | -0.256 | 0.032 |
| glucAc | -0.282 | -0.28 |
| Rv0950ko | -0.944 | -0.449 |
| Rv1096ko | 0.133 | 0.582 |
| Rv3684ko | -0.187 | -0.829 |
| delta_otsA_trehalose | -0.042 | -0.355 |