TnSeqCorr

Top 10 genes with highest correlation to Rv3087/-:

update plotcorrelationlink to info on gene
Rv1135c/PPE16 (cc=0.5028) info on Rv1135c/PPE16
Rv0992c/- (cc=0.4877) info on Rv0992c/-
Rv1969/mce3D (cc=0.4801) info on Rv1969/mce3D
Rv1071c/echA9 (cc=0.4784) info on Rv1071c/echA9
Rv2287/yjcE (cc=0.4766) info on Rv2287/yjcE
Rv3180c/- (cc=0.462) info on Rv3180c/-
Rv1735c/- (cc=0.4451) info on Rv1735c/-
Rv0687/- (cc=0.4407) info on Rv0687/-
Rv3056/dinP (cc=0.4304) info on Rv3056/dinP
Rv1356c/- (cc=0.4296) info on Rv1356c/-

Correlation of Rv3087/- with Rv1135c/PPE16

Normalized LFCs for Rv3087/-:
(description and provenance of datasets)
Rv3087/-Rv1135c/PPE16
Fe_supp_jason_reseq

-1.351

-0.655

low_pH_jason_reseq

-1.103

-1.094

NO_jason_reseq

0.176

-0.551

B6_jason_reseq

-0.435

-0.13

MHCII_jason_reseq

-0.358

0.093

Isoniazid02

0.074

0.362

Rifampicin4

1.118

1.075

Ethambutol3

-0.109

0.67

Meropenem3

0.728

0.718

Vancomycin16

0.414

0.846

Rv2680_day32

0.325

-0.104

H37Rv_KO_MarP

0.313

-0.344

hypoxia_3wks

-0.989

-0.65

hypoxia_6wks

-1.029

-0.443

glycerol

-0.067

0.151

cholesterol

-0.019

0.101

AJ

-0.237

0.402

Bibs02

-1.111

0.646

Bibs02c

-0.183

0.382

BL6

-0.155

-0.562

BL6a

-0.364

-0.37

BXD01

-0.47

-0.218

BXD010

-0.855

-0.642

BXD011

-0.982

-0.181

BXD03

-0.347

-0.455

BXD04

-0.358

-0.192

BXD05

-0.473

0.289

BXD06

-0.78

-0.469

BXD07

-0.794

-0.111

BXD08

0.147

-0.267

BXD09

-0.759

-0.472

CAST

-0.853

-0.103

CCcont

-0.682

-1.193

DS01

-0.207

0.26

DS02

0.583

0.365

DS04

0.215

0.916

DS0c

0.096

0.456

GP01

-0.647

-1.134

GP02

-0.068

0.087

GP0c

-0.096

-0.64

NOD

0.249

0.202

NZO

-0.12

-0.373

PWK

-0.637

0.429

H37Rv_KO_CtpC

0.507

0.187

H37Rv_KO_CtpD

-0.325

0.473

H37Rv_KO_Rv1272

-0.175

0.315

H37Rv_KO_SugABC

0.013

-0.288

H37Rv_KO_MbtN

-0.502

0.098

Trans05

0.557

0.446

macrophage_unactivated

-0.208

-0.48

IL1

-1.284

-1.017

Rapamycin

-1.418

-0.644

Tcell

1.166

-0.111

GMCSF

-1.378

-0.528

IFNab

-1.179

-0.91

IFNg

-0.297

-1.28

IFNg_GMCSF1

-0.207

-0.305

Rv1432_day32

-0.383

0.343

Rv1565c_day32

0.896

0.253

secA2_input

0.762

-0.437

delta_Rv3594

0.127

0.395

delta_Rv3717

0.374

0.257

delta_Rv3811

0.626

0.031

delta_Rv0954

0.521

0.72

PonA1

0.496

0.128

EccD1_KO

0.217

0.658

EspI_KO

0.157

0.456

PE35_KO

-0.268

0.939

PPE68_KO

-0.074

0.761

glycerol2

-0.503

-0.566

lignocerate

-0.108

-0.252

oleate

-0.493

-0.313

phosphatidylcholine

-0.176

-0.115

acetate

-0.256

-0.411

glucAc

-0.282

-0.255

Rv0950ko

-0.944

-0.211

Rv1096ko

0.133

-0.211

Rv3684ko

-0.187

-0.783

delta_otsA_trehalose

-0.042

-0.926