Top 10 genes with highest correlation to Rv3004/cfp6:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0895/- | (cc=0.5039) | info on Rv0895/- |
| Rv0800/pepC | (cc=0.4928) | info on Rv0800/pepC |
| Rv1208/gpgS | (cc=0.4856) | info on Rv1208/gpgS |
| Rv0664/vapB8 | (cc=0.4727) | info on Rv0664/vapB8 |
| Rv1023/eno | (cc=0.4695) | info on Rv1023/eno |
| Rv1125/- | (cc=0.4613) | info on Rv1125/- |
| Rv1638A/- | (cc=0.4537) | info on Rv1638A/- |
| Rv0306/- | (cc=0.4519) | info on Rv0306/- |
| Rv2307D/- | (cc=0.4389) | info on Rv2307D/- |
| Rv1136/- | (cc=0.4378) | info on Rv1136/- |
Correlation of Rv3004/cfp6 with Rv1638A/-
Normalized LFCs for Rv3004/cfp6:
(description and provenance of datasets)
| Rv3004/cfp6 | Rv1638A/- | |
| Fe_supp_jason_reseq | -1.746 | 0.74 |
| low_pH_jason_reseq | -2.802 | -0.192 |
| NO_jason_reseq | -0.215 | 0.415 |
| B6_jason_reseq | 1.311 | 0.982 |
| MHCII_jason_reseq | -0.604 | 0.893 |
| Isoniazid02 | -0.308 | 0.0 |
| Rifampicin4 | 0.23 | -0.374 |
| Ethambutol3 | -0.711 | -0.168 |
| Meropenem3 | -0.624 | -0.165 |
| Vancomycin16 | 0.114 | -0.366 |
| Rv2680_day32 | 0.131 | 0.0 |
| H37Rv_KO_MarP | -0.845 | -0.995 |
| hypoxia_3wks | -0.231 | 0.08 |
| hypoxia_6wks | 0.541 | 1.038 |
| glycerol | 0.471 | -0.199 |
| cholesterol | -0.156 | -1.288 |
| AJ | 0.834 | -1.708 |
| Bibs02 | 1.317 | 0.473 |
| Bibs02c | -0.406 | -1.694 |
| BL6 | -0.49 | -1.608 |
| BL6a | 0.888 | -0.439 |
| BXD01 | 0.352 | -1.055 |
| BXD010 | -0.728 | -1.548 |
| BXD011 | 0.491 | -0.64 |
| BXD03 | 0.085 | 0.062 |
| BXD04 | 0.395 | -1.406 |
| BXD05 | 0.43 | 0.444 |
| BXD06 | -0.418 | -0.296 |
| BXD07 | 0.0 | -1.052 |
| BXD08 | 0.013 | -0.032 |
| BXD09 | 0.938 | -0.138 |
| CAST | 0.991 | -0.577 |
| CCcont | 0.0 | -1.597 |
| DS01 | 1.711 | -0.814 |
| DS02 | 1.418 | -0.359 |
| DS04 | -0.271 | -0.216 |
| DS0c | 1.738 | -0.418 |
| GP01 | -0.309 | -2.256 |
| GP02 | -1.639 | -1.901 |
| GP0c | -1.209 | -2.723 |
| NOD | 0.142 | -0.81 |
| NZO | 2.068 | -0.12 |
| PWK | -0.404 | -0.023 |
| H37Rv_KO_CtpC | -3.53 | -2.535 |
| H37Rv_KO_CtpD | -2.851 | -2.767 |
| H37Rv_KO_Rv1272 | -0.124 | -1.216 |
| H37Rv_KO_SugABC | -2.014 | 0.812 |
| H37Rv_KO_MbtN | -0.417 | -2.355 |
| Trans05 | -0.807 | -1.441 |
| macrophage_unactivated | 0.492 | 0.17 |
| IL1 | 0.039 | 0.264 |
| Rapamycin | 0.813 | -0.473 |
| Tcell | 2.095 | -0.775 |
| GMCSF | 0.29 | 0.496 |
| IFNab | 0.366 | 0.986 |
| IFNg | 2.245 | 0.588 |
| IFNg_GMCSF1 | 0.233 | -1.247 |
| Rv1432_day32 | -1.079 | 0.0 |
| Rv1565c_day32 | -1.229 | 0.0 |
| secA2_input | -3.611 | 0.598 |
| delta_Rv3594 | 1.869 | 4.505 |
| delta_Rv3717 | 0.405 | 2.81 |
| delta_Rv3811 | 1.096 | 2.748 |
| delta_Rv0954 | 1.613 | 1.553 |
| PonA1 | 2.748 | 4.464 |
| EccD1_KO | 3.983 | 0.194 |
| EspI_KO | 4.195 | 2.938 |
| PE35_KO | 3.209 | 0.796 |
| PPE68_KO | 2.003 | -0.195 |
| glycerol2 | 0.834 | -1.065 |
| lignocerate | 0.952 | -1.34 |
| oleate | 0.948 | 0.15 |
| phosphatidylcholine | 0.466 | -1.199 |
| acetate | 0.457 | -0.622 |
| glucAc | 0.415 | -2.082 |
| Rv0950ko | 1.061 | 0.874 |
| Rv1096ko | 2.147 | 3.685 |
| Rv3684ko | 0.567 | 0.498 |
| delta_otsA_trehalose | -0.837 | -0.468 |