Top 10 genes with highest correlation to Rv3004/cfp6:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0895/- | (cc=0.5039) | info on Rv0895/- |
| Rv0800/pepC | (cc=0.4928) | info on Rv0800/pepC |
| Rv1208/gpgS | (cc=0.4856) | info on Rv1208/gpgS |
| Rv0664/vapB8 | (cc=0.4727) | info on Rv0664/vapB8 |
| Rv1023/eno | (cc=0.4695) | info on Rv1023/eno |
| Rv1125/- | (cc=0.4613) | info on Rv1125/- |
| Rv1638A/- | (cc=0.4537) | info on Rv1638A/- |
| Rv0306/- | (cc=0.4519) | info on Rv0306/- |
| Rv2307D/- | (cc=0.4389) | info on Rv2307D/- |
| Rv1136/- | (cc=0.4378) | info on Rv1136/- |
Correlation of Rv3004/cfp6 with Rv0800/pepC
Normalized LFCs for Rv3004/cfp6:
(description and provenance of datasets)
| Rv3004/cfp6 | Rv0800/pepC | |
| Fe_supp_jason_reseq | -1.746 | -0.226 |
| low_pH_jason_reseq | -2.802 | -0.647 |
| NO_jason_reseq | -0.215 | -0.278 |
| B6_jason_reseq | 1.311 | -0.668 |
| MHCII_jason_reseq | -0.604 | -0.017 |
| Isoniazid02 | -0.308 | 0.793 |
| Rifampicin4 | 0.23 | -0.054 |
| Ethambutol3 | -0.711 | -0.148 |
| Meropenem3 | -0.624 | -0.198 |
| Vancomycin16 | 0.114 | 0.101 |
| Rv2680_day32 | 0.131 | -1.292 |
| H37Rv_KO_MarP | -0.845 | 0.652 |
| hypoxia_3wks | -0.231 | -0.706 |
| hypoxia_6wks | 0.541 | -0.04 |
| glycerol | 0.471 | 1.044 |
| cholesterol | -0.156 | 0.375 |
| AJ | 0.834 | 0.803 |
| Bibs02 | 1.317 | 0.241 |
| Bibs02c | -0.406 | -0.721 |
| BL6 | -0.49 | -0.537 |
| BL6a | 0.888 | -0.782 |
| BXD01 | 0.352 | -0.111 |
| BXD010 | -0.728 | 0.101 |
| BXD011 | 0.491 | -0.125 |
| BXD03 | 0.085 | -0.3 |
| BXD04 | 0.395 | 0.675 |
| BXD05 | 0.43 | -0.032 |
| BXD06 | -0.418 | 0.0 |
| BXD07 | 0.0 | 0.079 |
| BXD08 | 0.013 | 0.217 |
| BXD09 | 0.938 | 0.033 |
| CAST | 0.991 | 0.105 |
| CCcont | 0.0 | 0.492 |
| DS01 | 1.711 | 0.311 |
| DS02 | 1.418 | -0.611 |
| DS04 | -0.271 | 0.336 |
| DS0c | 1.738 | 0.501 |
| GP01 | -0.309 | -0.637 |
| GP02 | -1.639 | 0.646 |
| GP0c | -1.209 | -0.679 |
| NOD | 0.142 | 0.177 |
| NZO | 2.068 | 0.069 |
| PWK | -0.404 | 1.202 |
| H37Rv_KO_CtpC | -3.53 | -0.407 |
| H37Rv_KO_CtpD | -2.851 | -0.337 |
| H37Rv_KO_Rv1272 | -0.124 | -1.555 |
| H37Rv_KO_SugABC | -2.014 | -0.309 |
| H37Rv_KO_MbtN | -0.417 | 0.208 |
| Trans05 | -0.807 | -1.79 |
| macrophage_unactivated | 0.492 | -0.499 |
| IL1 | 0.039 | 0.311 |
| Rapamycin | 0.813 | -0.258 |
| Tcell | 2.095 | 0.505 |
| GMCSF | 0.29 | 0.312 |
| IFNab | 0.366 | -0.432 |
| IFNg | 2.245 | 0.347 |
| IFNg_GMCSF1 | 0.233 | -0.544 |
| Rv1432_day32 | -1.079 | 0.01 |
| Rv1565c_day32 | -1.229 | 0.196 |
| secA2_input | -3.611 | -0.67 |
| delta_Rv3594 | 1.869 | 0.828 |
| delta_Rv3717 | 0.405 | 0.303 |
| delta_Rv3811 | 1.096 | 1.255 |
| delta_Rv0954 | 1.613 | 0.943 |
| PonA1 | 2.748 | 1.541 |
| EccD1_KO | 3.983 | 1.105 |
| EspI_KO | 4.195 | 1.6 |
| PE35_KO | 3.209 | 1.088 |
| PPE68_KO | 2.003 | 1.251 |
| glycerol2 | 0.834 | 0.245 |
| lignocerate | 0.952 | 0.805 |
| oleate | 0.948 | -0.023 |
| phosphatidylcholine | 0.466 | 0.499 |
| acetate | 0.457 | 1.461 |
| glucAc | 0.415 | 0.304 |
| Rv0950ko | 1.061 | -0.458 |
| Rv1096ko | 2.147 | 0.582 |
| Rv3684ko | 0.567 | -0.35 |
| delta_otsA_trehalose | -0.837 | -0.199 |