Top 10 genes with highest correlation to Rv3002c/ilvN:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2956/- | (cc=0.4482) | info on Rv2956/- |
| Rv0531/- | (cc=0.4354) | info on Rv0531/- |
| Rv2690c/- | (cc=0.3855) | info on Rv2690c/- |
| Rv1512/epiA | (cc=0.3578) | info on Rv1512/epiA |
| Rv3102c/ftsE | (cc=0.3569) | info on Rv3102c/ftsE |
| Rv2174/mptA | (cc=0.3524) | info on Rv2174/mptA |
| Rv1114/vapC32 | (cc=0.3497) | info on Rv1114/vapC32 |
| Rv2798c/- | (cc=0.3438) | info on Rv2798c/- |
| Rv1872c/lldD2 | (cc=0.3273) | info on Rv1872c/lldD2 |
| Rv2221c/glnE | (cc=0.3259) | info on Rv2221c/glnE |
Correlation of Rv3002c/ilvN with Rv2956/-
Normalized LFCs for Rv3002c/ilvN:
(description and provenance of datasets)
| Rv3002c/ilvN | Rv2956/- | |
| Fe_supp_jason_reseq | 1.339 | 2.131 |
| low_pH_jason_reseq | 0.0 | 0.117 |
| NO_jason_reseq | 0.0 | 0.53 |
| B6_jason_reseq | 0.0 | 0.649 |
| MHCII_jason_reseq | 0.257 | 1.786 |
| Isoniazid02 | -0.183 | -0.13 |
| Rifampicin4 | 0.0 | 0.579 |
| Ethambutol3 | 0.0 | 0.035 |
| Meropenem3 | 0.497 | 0.701 |
| Vancomycin16 | 1.101 | 0.568 |
| Rv2680_day32 | 0.0 | 0.0 |
| H37Rv_KO_MarP | -1.197 | -0.059 |
| hypoxia_3wks | 0.55 | 0.522 |
| hypoxia_6wks | 0.0 | 1.361 |
| glycerol | -0.202 | -1.349 |
| cholesterol | -0.145 | -0.327 |
| AJ | -0.232 | 1.239 |
| Bibs02 | -0.183 | 0.201 |
| Bibs02c | -0.209 | 0.388 |
| BL6 | -0.125 | 1.138 |
| BL6a | 0.181 | 0.552 |
| BXD01 | 0.227 | -0.343 |
| BXD010 | 0.224 | 1.676 |
| BXD011 | -0.127 | 0.702 |
| BXD03 | 2.111 | 1.578 |
| BXD04 | -0.124 | -0.636 |
| BXD05 | 0.0 | 1.141 |
| BXD06 | 0.122 | 0.713 |
| BXD07 | 0.126 | 0.446 |
| BXD08 | 0.0 | 0.485 |
| BXD09 | -0.14 | 0.295 |
| CAST | -0.23 | 1.27 |
| CCcont | -0.149 | 0.823 |
| DS01 | -0.236 | 0.133 |
| DS02 | -0.217 | 0.507 |
| DS04 | 0.489 | 1.102 |
| DS0c | -0.217 | 0.96 |
| GP01 | -0.099 | 0.474 |
| GP02 | -0.083 | 0.303 |
| GP0c | -0.13 | -0.203 |
| NOD | -0.225 | 1.528 |
| NZO | -0.199 | -0.525 |
| PWK | -0.196 | 0.715 |
| H37Rv_KO_CtpC | -0.162 | -1.604 |
| H37Rv_KO_CtpD | -0.127 | 1.779 |
| H37Rv_KO_Rv1272 | -0.141 | -0.537 |
| H37Rv_KO_SugABC | 0.451 | 1.643 |
| H37Rv_KO_MbtN | -0.103 | 1.894 |
| Trans05 | -0.131 | 0.965 |
| macrophage_unactivated | 0.0 | -0.183 |
| IL1 | -0.374 | -0.113 |
| Rapamycin | -0.387 | -0.694 |
| Tcell | -0.857 | -0.124 |
| GMCSF | -0.333 | 0.29 |
| IFNab | 0.973 | -0.484 |
| IFNg | -0.703 | -0.371 |
| IFNg_GMCSF1 | 0.0 | 0.817 |
| Rv1432_day32 | 0.0 | 0.559 |
| Rv1565c_day32 | 0.0 | 0.182 |
| secA2_input | -0.412 | -1.533 |
| delta_Rv3594 | 0.402 | 0.895 |
| delta_Rv3717 | 0.61 | 1.016 |
| delta_Rv3811 | 1.139 | 1.591 |
| delta_Rv0954 | 0.0 | 1.426 |
| PonA1 | 0.0 | 1.623 |
| EccD1_KO | 1.542 | 2.161 |
| EspI_KO | -0.687 | 0.588 |
| PE35_KO | 1.811 | 2.581 |
| PPE68_KO | -0.771 | 1.629 |
| glycerol2 | 0.0 | -0.219 |
| lignocerate | 0.0 | 0.212 |
| oleate | 0.0 | -0.404 |
| phosphatidylcholine | 0.0 | 0.101 |
| acetate | 0.0 | -0.329 |
| glucAc | 0.0 | 0.146 |
| Rv0950ko | -0.482 | 1.517 |
| Rv1096ko | -0.483 | -0.247 |
| Rv3684ko | -0.524 | -0.134 |
| delta_otsA_trehalose | 0.0 | 0.468 |