Top 10 genes with highest correlation to Rv2967c/pca:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0467/icl1 | (cc=0.482) | info on Rv0467/icl1 |
| Rv3552/- | (cc=0.4818) | info on Rv3552/- |
| Rv0155/pntAa | (cc=0.47) | info on Rv0155/pntAa |
| Rv1020/mfd | (cc=0.4673) | info on Rv1020/mfd |
| Rv3160c/- | (cc=0.465) | info on Rv3160c/- |
| Rv1233c/- | (cc=0.4538) | info on Rv1233c/- |
| Rv1193/fadD36 | (cc=0.4504) | info on Rv1193/fadD36 |
| Rv3678c/- | (cc=0.4416) | info on Rv3678c/- |
| Rv1178/- | (cc=0.4372) | info on Rv1178/- |
| Rv0296c/- | (cc=0.4361) | info on Rv0296c/- |
Correlation of Rv2967c/pca with Rv3160c/-
Normalized LFCs for Rv2967c/pca:
(description and provenance of datasets)
| Rv2967c/pca | Rv3160c/- | |
| Fe_supp_jason_reseq | -0.969 | 0.881 |
| low_pH_jason_reseq | -2.853 | -3.092 |
| NO_jason_reseq | -0.845 | -4.489 |
| B6_jason_reseq | -2.577 | -2.051 |
| MHCII_jason_reseq | -2.366 | -1.806 |
| Isoniazid02 | 0.119 | -1.491 |
| Rifampicin4 | 0.634 | 2.708 |
| Ethambutol3 | 0.452 | 3.085 |
| Meropenem3 | 1.198 | 0.308 |
| Vancomycin16 | 1.157 | -0.268 |
| Rv2680_day32 | -1.75 | -2.089 |
| H37Rv_KO_MarP | 0.847 | -1.269 |
| hypoxia_3wks | -3.166 | -3.381 |
| hypoxia_6wks | -1.658 | -3.571 |
| glycerol | 0.65 | -1.712 |
| cholesterol | 0.509 | -0.967 |
| AJ | -1.78 | -1.966 |
| Bibs02 | -1.403 | -2.265 |
| Bibs02c | -0.976 | -1.076 |
| BL6 | -0.758 | -1.144 |
| BL6a | -0.68 | -1.956 |
| BXD01 | -0.374 | -1.613 |
| BXD010 | 1.056 | -1.471 |
| BXD011 | -0.111 | -0.998 |
| BXD03 | 0.554 | -1.81 |
| BXD04 | 0.541 | -0.969 |
| BXD05 | -0.179 | -0.975 |
| BXD06 | 0.0 | -0.752 |
| BXD07 | -0.185 | -1.715 |
| BXD08 | -0.382 | -1.415 |
| BXD09 | 0.058 | -0.939 |
| CAST | -1.767 | -2.107 |
| CCcont | 1.629 | 1.685 |
| DS01 | -2.026 | -1.851 |
| DS02 | -1.668 | -2.911 |
| DS04 | -1.488 | -1.405 |
| DS0c | -1.86 | -1.985 |
| GP01 | -0.946 | -1.322 |
| GP02 | -0.797 | -1.031 |
| GP0c | -1.245 | -1.741 |
| NOD | -1.362 | -0.675 |
| NZO | -0.931 | -2.67 |
| PWK | -0.563 | -2.626 |
| H37Rv_KO_CtpC | -0.654 | -0.76 |
| H37Rv_KO_CtpD | 0.589 | 1.353 |
| H37Rv_KO_Rv1272 | -1.351 | -0.319 |
| H37Rv_KO_SugABC | 0.288 | -0.84 |
| H37Rv_KO_MbtN | -0.09 | 1.424 |
| Trans05 | -1.002 | -1.024 |
| macrophage_unactivated | -1.607 | -0.505 |
| IL1 | 0.836 | -0.113 |
| Rapamycin | 0.767 | 0.227 |
| Tcell | -0.13 | 3.135 |
| GMCSF | -0.322 | -2.445 |
| IFNab | 0.23 | -2.382 |
| IFNg | -0.326 | -1.042 |
| IFNg_GMCSF1 | -1.778 | -1.898 |
| Rv1432_day32 | -1.254 | -2.331 |
| Rv1565c_day32 | -0.725 | -2.443 |
| secA2_input | 0.953 | -0.504 |
| delta_Rv3594 | -1.182 | 0.08 |
| delta_Rv3717 | -0.898 | -0.137 |
| delta_Rv3811 | -1.24 | -0.528 |
| delta_Rv0954 | -0.404 | 0.744 |
| PonA1 | 1.566 | -0.572 |
| EccD1_KO | -0.171 | 1.46 |
| EspI_KO | -0.456 | 1.3 |
| PE35_KO | 2.016 | 0.592 |
| PPE68_KO | 1.078 | 0.787 |
| glycerol2 | -1.679 | 2.413 |
| lignocerate | -1.087 | 0.0 |
| oleate | -1.365 | 0.0 |
| phosphatidylcholine | -1.8 | 0.0 |
| acetate | -0.191 | 0.437 |
| glucAc | -0.012 | 1.481 |
| Rv0950ko | -0.283 | 0.802 |
| Rv1096ko | -0.986 | -1.182 |
| Rv3684ko | -1.379 | -0.662 |
| delta_otsA_trehalose | 1.349 | 3.118 |