Top 10 genes with highest correlation to Rv2967c/pca:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0467/icl1 | (cc=0.482) | info on Rv0467/icl1 |
| Rv3552/- | (cc=0.4818) | info on Rv3552/- |
| Rv0155/pntAa | (cc=0.47) | info on Rv0155/pntAa |
| Rv1020/mfd | (cc=0.4673) | info on Rv1020/mfd |
| Rv3160c/- | (cc=0.465) | info on Rv3160c/- |
| Rv1233c/- | (cc=0.4538) | info on Rv1233c/- |
| Rv1193/fadD36 | (cc=0.4504) | info on Rv1193/fadD36 |
| Rv3678c/- | (cc=0.4416) | info on Rv3678c/- |
| Rv1178/- | (cc=0.4372) | info on Rv1178/- |
| Rv0296c/- | (cc=0.4361) | info on Rv0296c/- |
Correlation of Rv2967c/pca with Rv0467/icl1
Normalized LFCs for Rv2967c/pca:
(description and provenance of datasets)
| Rv2967c/pca | Rv0467/icl1 | |
| Fe_supp_jason_reseq | -0.969 | 0.182 |
| low_pH_jason_reseq | -2.853 | -0.211 |
| NO_jason_reseq | -0.845 | -0.69 |
| B6_jason_reseq | -2.577 | -0.292 |
| MHCII_jason_reseq | -2.366 | -0.257 |
| Isoniazid02 | 0.119 | 0.201 |
| Rifampicin4 | 0.634 | 0.712 |
| Ethambutol3 | 0.452 | 0.59 |
| Meropenem3 | 1.198 | 0.165 |
| Vancomycin16 | 1.157 | 0.366 |
| Rv2680_day32 | -1.75 | 0.0 |
| H37Rv_KO_MarP | 0.847 | 0.586 |
| hypoxia_3wks | -3.166 | 0.0 |
| hypoxia_6wks | -1.658 | 0.0 |
| glycerol | 0.65 | 0.554 |
| cholesterol | 0.509 | 0.0 |
| AJ | -1.78 | 0.0 |
| Bibs02 | -1.403 | 0.0 |
| Bibs02c | -0.976 | 0.0 |
| BL6 | -0.758 | 0.0 |
| BL6a | -0.68 | 0.0 |
| BXD01 | -0.374 | 0.0 |
| BXD010 | 1.056 | 0.0 |
| BXD011 | -0.111 | 0.0 |
| BXD03 | 0.554 | 0.0 |
| BXD04 | 0.541 | 0.0 |
| BXD05 | -0.179 | 0.0 |
| BXD06 | 0.0 | 0.0 |
| BXD07 | -0.185 | 0.0 |
| BXD08 | -0.382 | 0.0 |
| BXD09 | 0.058 | 0.0 |
| CAST | -1.767 | 0.0 |
| CCcont | 1.629 | 1.765 |
| DS01 | -2.026 | 0.0 |
| DS02 | -1.668 | 0.0 |
| DS04 | -1.488 | 0.194 |
| DS0c | -1.86 | 0.0 |
| GP01 | -0.946 | 0.0 |
| GP02 | -0.797 | 0.0 |
| GP0c | -1.245 | 0.0 |
| NOD | -1.362 | 0.0 |
| NZO | -0.931 | 0.0 |
| PWK | -0.563 | 0.0 |
| H37Rv_KO_CtpC | -0.654 | 0.0 |
| H37Rv_KO_CtpD | 0.589 | 0.537 |
| H37Rv_KO_Rv1272 | -1.351 | 0.0 |
| H37Rv_KO_SugABC | 0.288 | 0.0 |
| H37Rv_KO_MbtN | -0.09 | 0.196 |
| Trans05 | -1.002 | 0.0 |
| macrophage_unactivated | -1.607 | 0.0 |
| IL1 | 0.836 | 0.0 |
| Rapamycin | 0.767 | 0.0 |
| Tcell | -0.13 | 0.0 |
| GMCSF | -0.322 | 0.0 |
| IFNab | 0.23 | 0.0 |
| IFNg | -0.326 | 0.0 |
| IFNg_GMCSF1 | -1.778 | 0.0 |
| Rv1432_day32 | -1.254 | 0.0 |
| Rv1565c_day32 | -0.725 | 0.0 |
| secA2_input | 0.953 | 1.77 |
| delta_Rv3594 | -1.182 | -0.193 |
| delta_Rv3717 | -0.898 | -0.159 |
| delta_Rv3811 | -1.24 | -0.391 |
| delta_Rv0954 | -0.404 | 0.65 |
| PonA1 | 1.566 | -0.304 |
| EccD1_KO | -0.171 | 0.0 |
| EspI_KO | -0.456 | 1.859 |
| PE35_KO | 2.016 | 2.917 |
| PPE68_KO | 1.078 | 2.678 |
| glycerol2 | -1.679 | -1.073 |
| lignocerate | -1.087 | -0.933 |
| oleate | -1.365 | -1.086 |
| phosphatidylcholine | -1.8 | -1.073 |
| acetate | -0.191 | 0.136 |
| glucAc | -0.012 | 0.451 |
| Rv0950ko | -0.283 | -1.182 |
| Rv1096ko | -0.986 | -2.434 |
| Rv3684ko | -1.379 | -1.284 |
| delta_otsA_trehalose | 1.349 | 0.0 |