Top 10 genes with highest correlation to Rv2967c/pca:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0467/icl1 | (cc=0.482) | info on Rv0467/icl1 |
| Rv3552/- | (cc=0.4818) | info on Rv3552/- |
| Rv0155/pntAa | (cc=0.47) | info on Rv0155/pntAa |
| Rv1020/mfd | (cc=0.4673) | info on Rv1020/mfd |
| Rv3160c/- | (cc=0.465) | info on Rv3160c/- |
| Rv1233c/- | (cc=0.4538) | info on Rv1233c/- |
| Rv1193/fadD36 | (cc=0.4504) | info on Rv1193/fadD36 |
| Rv3678c/- | (cc=0.4416) | info on Rv3678c/- |
| Rv1178/- | (cc=0.4372) | info on Rv1178/- |
| Rv0296c/- | (cc=0.4361) | info on Rv0296c/- |
Correlation of Rv2967c/pca with Rv1178/-
Normalized LFCs for Rv2967c/pca:
(description and provenance of datasets)
| Rv2967c/pca | Rv1178/- | |
| Fe_supp_jason_reseq | -0.969 | -1.039 |
| low_pH_jason_reseq | -2.853 | 0.527 |
| NO_jason_reseq | -0.845 | -5.222 |
| B6_jason_reseq | -2.577 | -1.36 |
| MHCII_jason_reseq | -2.366 | -2.581 |
| Isoniazid02 | 0.119 | -1.072 |
| Rifampicin4 | 0.634 | -0.523 |
| Ethambutol3 | 0.452 | 1.677 |
| Meropenem3 | 1.198 | 1.154 |
| Vancomycin16 | 1.157 | -0.976 |
| Rv2680_day32 | -1.75 | -2.122 |
| H37Rv_KO_MarP | 0.847 | 3.838 |
| hypoxia_3wks | -3.166 | -4.625 |
| hypoxia_6wks | -1.658 | -2.422 |
| glycerol | 0.65 | 1.631 |
| cholesterol | 0.509 | 1.675 |
| AJ | -1.78 | -0.585 |
| Bibs02 | -1.403 | -0.294 |
| Bibs02c | -0.976 | -0.277 |
| BL6 | -0.758 | -0.53 |
| BL6a | -0.68 | 0.049 |
| BXD01 | -0.374 | -0.458 |
| BXD010 | 1.056 | -0.065 |
| BXD011 | -0.111 | -0.243 |
| BXD03 | 0.554 | -0.573 |
| BXD04 | 0.541 | 0.117 |
| BXD05 | -0.179 | -0.975 |
| BXD06 | 0.0 | -0.337 |
| BXD07 | -0.185 | 0.034 |
| BXD08 | -0.382 | -0.422 |
| BXD09 | 0.058 | -0.494 |
| CAST | -1.767 | -0.654 |
| CCcont | 1.629 | 1.517 |
| DS01 | -2.026 | -0.83 |
| DS02 | -1.668 | -0.288 |
| DS04 | -1.488 | 0.0 |
| DS0c | -1.86 | -1.268 |
| GP01 | -0.946 | -0.382 |
| GP02 | -0.797 | -0.839 |
| GP0c | -1.245 | -0.551 |
| NOD | -1.362 | -0.789 |
| NZO | -0.931 | 0.405 |
| PWK | -0.563 | -1.326 |
| H37Rv_KO_CtpC | -0.654 | 0.329 |
| H37Rv_KO_CtpD | 0.589 | 0.061 |
| H37Rv_KO_Rv1272 | -1.351 | -0.109 |
| H37Rv_KO_SugABC | 0.288 | 0.138 |
| H37Rv_KO_MbtN | -0.09 | -0.558 |
| Trans05 | -1.002 | 0.0 |
| macrophage_unactivated | -1.607 | 0.609 |
| IL1 | 0.836 | 0.463 |
| Rapamycin | 0.767 | 1.114 |
| Tcell | -0.13 | 0.388 |
| GMCSF | -0.322 | -1.436 |
| IFNab | 0.23 | -1.297 |
| IFNg | -0.326 | -1.0 |
| IFNg_GMCSF1 | -1.778 | 0.49 |
| Rv1432_day32 | -1.254 | -1.602 |
| Rv1565c_day32 | -0.725 | -3.533 |
| secA2_input | 0.953 | -0.205 |
| delta_Rv3594 | -1.182 | -0.199 |
| delta_Rv3717 | -0.898 | -1.602 |
| delta_Rv3811 | -1.24 | -1.344 |
| delta_Rv0954 | -0.404 | 2.212 |
| PonA1 | 1.566 | 1.711 |
| EccD1_KO | -0.171 | 0.47 |
| EspI_KO | -0.456 | 0.485 |
| PE35_KO | 2.016 | 0.723 |
| PPE68_KO | 1.078 | 0.873 |
| glycerol2 | -1.679 | -1.789 |
| lignocerate | -1.087 | -2.153 |
| oleate | -1.365 | -2.105 |
| phosphatidylcholine | -1.8 | -2.899 |
| acetate | -0.191 | -0.888 |
| glucAc | -0.012 | -0.754 |
| Rv0950ko | -0.283 | 3.745 |
| Rv1096ko | -0.986 | 2.569 |
| Rv3684ko | -1.379 | 3.871 |
| delta_otsA_trehalose | 1.349 | 0.415 |