Top 10 genes with highest correlation to Rv2962c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1866/- | (cc=0.5811) | info on Rv1866/- |
| Rv3223c/sigH | (cc=0.5099) | info on Rv3223c/sigH |
| Rv3555c/- | (cc=0.4758) | info on Rv3555c/- |
| Rv1755c/plcD | (cc=0.4722) | info on Rv1755c/plcD |
| Rv1872c/lldD2 | (cc=0.4636) | info on Rv1872c/lldD2 |
| Rv1913/- | (cc=0.4592) | info on Rv1913/- |
| Rv3110/moaB1 | (cc=0.4558) | info on Rv3110/moaB1 |
| Rv1087/PE_PGRS21 | (cc=0.4554) | info on Rv1087/PE_PGRS21 |
| Rv2841c/nusA | (cc=0.4546) | info on Rv2841c/nusA |
| Rv1962A/vapB35 | (cc=0.4544) | info on Rv1962A/vapB35 |
Correlation of Rv2962c/- with Rv3555c/-
Normalized LFCs for Rv2962c/-:
(description and provenance of datasets)
| Rv2962c/- | Rv3555c/- | |
| Fe_supp_jason_reseq | 0.655 | -1.642 |
| low_pH_jason_reseq | -0.823 | -0.427 |
| NO_jason_reseq | -0.142 | -0.158 |
| B6_jason_reseq | 0.103 | -3.052 |
| MHCII_jason_reseq | 0.459 | -0.977 |
| Isoniazid02 | 1.398 | -0.247 |
| Rifampicin4 | -0.192 | -0.523 |
| Ethambutol3 | 1.025 | -0.153 |
| Meropenem3 | -0.193 | 0.024 |
| Vancomycin16 | -0.326 | 0.0 |
| Rv2680_day32 | 0.05 | -0.916 |
| H37Rv_KO_MarP | 0.586 | 0.103 |
| hypoxia_3wks | 0.239 | -0.267 |
| hypoxia_6wks | 0.056 | -1.361 |
| glycerol | -0.984 | -0.554 |
| cholesterol | 1.795 | 0.864 |
| AJ | 0.35 | -0.297 |
| Bibs02 | -0.351 | -0.408 |
| Bibs02c | -0.606 | -1.881 |
| BL6 | 1.034 | 0.627 |
| BL6a | 0.026 | 0.785 |
| BXD01 | 0.577 | 1.705 |
| BXD010 | 0.626 | 0.278 |
| BXD011 | 0.111 | 0.87 |
| BXD03 | 0.396 | 1.032 |
| BXD04 | 0.461 | 2.404 |
| BXD05 | 0.203 | -0.056 |
| BXD06 | 0.331 | 1.189 |
| BXD07 | 0.504 | 1.662 |
| BXD08 | 0.514 | 1.208 |
| BXD09 | 0.362 | 1.228 |
| CAST | -0.235 | -1.49 |
| CCcont | 0.57 | 0.0 |
| DS01 | 0.248 | -0.197 |
| DS02 | 0.176 | -0.38 |
| DS04 | -0.013 | -0.984 |
| DS0c | 0.163 | -0.596 |
| GP01 | 0.759 | 2.544 |
| GP02 | 1.286 | 2.419 |
| GP0c | 0.698 | 2.452 |
| NOD | 0.732 | -0.392 |
| NZO | 0.026 | -1.011 |
| PWK | 0.148 | 0.61 |
| H37Rv_KO_CtpC | 0.459 | 1.632 |
| H37Rv_KO_CtpD | 1.486 | 1.273 |
| H37Rv_KO_Rv1272 | 0.532 | 0.351 |
| H37Rv_KO_SugABC | 0.535 | 0.865 |
| H37Rv_KO_MbtN | 1.092 | 0.118 |
| Trans05 | 0.78 | 1.333 |
| macrophage_unactivated | -0.18 | -1.13 |
| IL1 | -0.878 | 0.169 |
| Rapamycin | -1.004 | -0.878 |
| Tcell | -0.583 | 0.362 |
| GMCSF | -1.075 | -2.075 |
| IFNab | -0.626 | -1.312 |
| IFNg | -0.831 | -1.601 |
| IFNg_GMCSF1 | -0.65 | -1.882 |
| Rv1432_day32 | 0.159 | 0.0 |
| Rv1565c_day32 | 0.047 | 0.535 |
| secA2_input | -0.576 | -0.186 |
| delta_Rv3594 | 0.113 | -0.626 |
| delta_Rv3717 | -0.036 | -0.693 |
| delta_Rv3811 | 0.11 | -1.054 |
| delta_Rv0954 | 0.554 | -1.452 |
| PonA1 | -0.022 | -2.038 |
| EccD1_KO | 0.832 | -1.536 |
| EspI_KO | -0.086 | -0.279 |
| PE35_KO | 0.615 | -0.995 |
| PPE68_KO | 0.563 | -1.091 |
| glycerol2 | 0.397 | 0.601 |
| lignocerate | 0.189 | -0.505 |
| oleate | 0.238 | 0.425 |
| phosphatidylcholine | 0.321 | 0.482 |
| acetate | 0.268 | -0.883 |
| glucAc | 0.346 | -1.352 |
| Rv0950ko | -0.169 | -0.694 |
| Rv1096ko | 0.229 | 0.781 |
| Rv3684ko | 0.416 | 0.301 |
| delta_otsA_trehalose | 1.239 | 1.858 |