TnSeqCorr

Top 10 genes with highest correlation to Rv2954c/-:

update plotcorrelationlink to info on gene
Rv2345/- (cc=0.5093) info on Rv2345/-
Rv3323c/moaX (cc=0.5085) info on Rv3323c/moaX
Rv1981c/nrdF1 (cc=0.5056) info on Rv1981c/nrdF1
Rv3164c/moxR3 (cc=0.5047) info on Rv3164c/moxR3
Rv2675c/- (cc=0.5015) info on Rv2675c/-
Rv1175c/fadH (cc=0.4701) info on Rv1175c/fadH
Rv2429/ahpD (cc=0.4693) info on Rv2429/ahpD
Rv2602/vapC41 (cc=0.4588) info on Rv2602/vapC41
Rv0940c/- (cc=0.4577) info on Rv0940c/-
Rv1511/gmdA (cc=0.4575) info on Rv1511/gmdA

Correlation of Rv2954c/- with Rv2429/ahpD

Normalized LFCs for Rv2954c/-:
(description and provenance of datasets)
Rv2954c/-Rv2429/ahpD
Fe_supp_jason_reseq

0.18

0.174

low_pH_jason_reseq

-1.161

-0.867

NO_jason_reseq

-0.412

0.0

B6_jason_reseq

-0.145

0.363

MHCII_jason_reseq

-0.033

1.557

Isoniazid02

-0.723

-4.061

Rifampicin4

0.241

0.171

Ethambutol3

-0.405

0.32

Meropenem3

-0.68

-0.819

Vancomycin16

-0.17

0.167

Rv2680_day32

0.205

-0.016

H37Rv_KO_MarP

-0.069

0.567

hypoxia_3wks

-0.104

0.311

hypoxia_6wks

0.052

0.464

glycerol

0.439

0.178

cholesterol

-0.029

0.015

AJ

-0.123

0.513

Bibs02

-0.449

0.212

Bibs02c

-0.631

1.36

BL6

0.216

0.58

BL6a

0.263

1.118

BXD01

0.268

0.56

BXD010

0.447

-0.448

BXD011

0.468

-0.123

BXD03

0.66

0.107

BXD04

0.546

0.418

BXD05

0.644

0.719

BXD06

0.056

0.053

BXD07

0.194

0.822

BXD08

-0.063

0.04

BXD09

0.494

-0.044

CAST

-0.053

-0.072

CCcont

0.171

0.816

DS01

-0.062

0.0

DS02

-0.169

0.534

DS04

0.222

-0.37

DS0c

0.368

0.718

GP01

1.056

0.509

GP02

-0.374

-1.258

GP0c

-0.138

-1.082

NOD

0.812

0.57

NZO

0.012

-0.481

PWK

0.347

0.155

H37Rv_KO_CtpC

-0.465

-0.592

H37Rv_KO_CtpD

0.501

0.751

H37Rv_KO_Rv1272

1.286

0.029

H37Rv_KO_SugABC

0.428

0.283

H37Rv_KO_MbtN

0.066

0.401

Trans05

0.423

1.134

macrophage_unactivated

-0.076

0.294

IL1

-0.641

-1.006

Rapamycin

0.055

0.083

Tcell

-0.394

-0.228

GMCSF

-0.05

1.014

IFNab

-0.357

-0.085

IFNg

0.206

0.732

IFNg_GMCSF1

1.178

0.17

Rv1432_day32

0.631

0.9

Rv1565c_day32

0.605

0.147

secA2_input

-0.775

-2.016

delta_Rv3594

0.083

1.462

delta_Rv3717

-0.186

0.132

delta_Rv3811

0.311

1.077

delta_Rv0954

0.075

1.145

PonA1

0.5

0.709

EccD1_KO

0.234

-0.756

EspI_KO

0.482

0.171

PE35_KO

0.846

0.502

PPE68_KO

0.419

0.963

glycerol2

1.092

0.943

lignocerate

0.822

0.839

oleate

1.143

0.818

phosphatidylcholine

1.049

0.796

acetate

0.007

0.519

glucAc

-0.026

0.423

Rv0950ko

0.223

-0.853

Rv1096ko

-0.63

-1.668

Rv3684ko

-0.082

-1.723

delta_otsA_trehalose

0.216

1.015