Top 10 genes with highest correlation to Rv2822c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1817/- | (cc=0.7829) | info on Rv1817/- |
| Rv2848c/cobB | (cc=0.7105) | info on Rv2848c/cobB |
| Rv2113/- | (cc=0.6508) | info on Rv2113/- |
| Rv0453/PPE11 | (cc=0.6223) | info on Rv0453/PPE11 |
| Rv3815c/- | (cc=0.5973) | info on Rv3815c/- |
| Rv0159c/PE3 | (cc=0.5468) | info on Rv0159c/PE3 |
| Rv3862c/whiB6 | (cc=0.4468) | info on Rv3862c/whiB6 |
| Rv1480/- | (cc=0.4429) | info on Rv1480/- |
| Rv1185c/fadD21 | (cc=0.434) | info on Rv1185c/fadD21 |
| Rv3685c/cyp137 | (cc=0.4255) | info on Rv3685c/cyp137 |
Correlation of Rv2822c/- with Rv0453/PPE11
Normalized LFCs for Rv2822c/-:
(description and provenance of datasets)
| Rv2822c/- | Rv0453/PPE11 | |
| Fe_supp_jason_reseq | -0.535 | 0.316 |
| low_pH_jason_reseq | -0.621 | -1.062 |
| NO_jason_reseq | -0.753 | -0.339 |
| B6_jason_reseq | -0.852 | 0.514 |
| MHCII_jason_reseq | -0.363 | 0.068 |
| Isoniazid02 | 1.998 | 0.535 |
| Rifampicin4 | -0.046 | -0.119 |
| Ethambutol3 | -0.299 | 0.539 |
| Meropenem3 | -0.32 | 0.121 |
| Vancomycin16 | 0.268 | 0.0 |
| Rv2680_day32 | -0.687 | -0.072 |
| H37Rv_KO_MarP | -0.196 | 0.315 |
| hypoxia_3wks | 0.582 | 0.144 |
| hypoxia_6wks | -0.338 | -0.265 |
| glycerol | 0.206 | -0.607 |
| cholesterol | 0.528 | -0.039 |
| AJ | -0.198 | -0.116 |
| Bibs02 | -0.109 | 0.087 |
| Bibs02c | 0.364 | 0.294 |
| BL6 | -0.479 | -0.962 |
| BL6a | -0.135 | 0.136 |
| BXD01 | 0.199 | -0.407 |
| BXD010 | -0.741 | -0.788 |
| BXD011 | -0.632 | -0.361 |
| BXD03 | 0.326 | 0.029 |
| BXD04 | -1.13 | -0.016 |
| BXD05 | -0.964 | -0.628 |
| BXD06 | -0.717 | -0.604 |
| BXD07 | -0.515 | -0.527 |
| BXD08 | -0.91 | -0.251 |
| BXD09 | -0.625 | -0.473 |
| CAST | 0.702 | 0.342 |
| CCcont | -0.169 | -1.136 |
| DS01 | -0.267 | 0.313 |
| DS02 | 0.106 | 0.605 |
| DS04 | -1.041 | 0.474 |
| DS0c | 0.423 | 0.167 |
| GP01 | -0.247 | -0.338 |
| GP02 | -0.435 | -0.053 |
| GP0c | 0.083 | -0.953 |
| NOD | 0.391 | -0.185 |
| NZO | 0.727 | -0.314 |
| PWK | -0.151 | 0.222 |
| H37Rv_KO_CtpC | 0.454 | -0.518 |
| H37Rv_KO_CtpD | -1.563 | -0.069 |
| H37Rv_KO_Rv1272 | 0.133 | 0.359 |
| H37Rv_KO_SugABC | 1.101 | 0.188 |
| H37Rv_KO_MbtN | -0.539 | 0.237 |
| Trans05 | 0.307 | 0.372 |
| macrophage_unactivated | 1.171 | 0.338 |
| IL1 | 1.812 | 1.106 |
| Rapamycin | 1.967 | 1.28 |
| Tcell | -4.412 | -3.421 |
| GMCSF | 1.679 | 1.708 |
| IFNab | 2.428 | 0.716 |
| IFNg | 1.898 | 1.799 |
| IFNg_GMCSF1 | 2.231 | 1.31 |
| Rv1432_day32 | 0.179 | -0.185 |
| Rv1565c_day32 | -0.622 | -0.169 |
| secA2_input | -0.308 | -0.319 |
| delta_Rv3594 | 1.222 | -0.15 |
| delta_Rv3717 | -0.747 | -0.458 |
| delta_Rv3811 | 0.805 | -0.574 |
| delta_Rv0954 | 0.291 | -0.707 |
| PonA1 | 0.384 | -0.613 |
| EccD1_KO | -1.322 | -0.257 |
| EspI_KO | 0.297 | -0.722 |
| PE35_KO | 1.07 | -0.688 |
| PPE68_KO | 1.174 | -0.614 |
| glycerol2 | 0.143 | 0.363 |
| lignocerate | 0.095 | -0.062 |
| oleate | 0.145 | 0.635 |
| phosphatidylcholine | 0.2 | 0.38 |
| acetate | -0.136 | -0.527 |
| glucAc | -0.206 | -0.797 |
| Rv0950ko | -1.423 | 0.302 |
| Rv1096ko | -1.086 | -0.431 |
| Rv3684ko | -0.806 | 0.259 |
| delta_otsA_trehalose | -0.711 | -0.974 |