Top 10 genes with highest correlation to Rv2811/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1773c/- | (cc=0.571) | info on Rv1773c/- |
| Rv0036c/- | (cc=0.5483) | info on Rv0036c/- |
| Rv1839c/vapB13 | (cc=0.5465) | info on Rv1839c/vapB13 |
| Rv0621/- | (cc=0.521) | info on Rv0621/- |
| Rv2917/- | (cc=0.4978) | info on Rv2917/- |
| Rv2226/- | (cc=0.4921) | info on Rv2226/- |
| Rv1555/frdD | (cc=0.4843) | info on Rv1555/frdD |
| Rv0377/- | (cc=0.4818) | info on Rv0377/- |
| Rv0406c/- | (cc=0.4799) | info on Rv0406c/- |
| Rv1657/argR | (cc=0.474) | info on Rv1657/argR |
Correlation of Rv2811/- with Rv1839c/vapB13
Normalized LFCs for Rv2811/-:
(description and provenance of datasets)
| Rv2811/- | Rv1839c/vapB13 | |
| Fe_supp_jason_reseq | -0.027 | 1.68 |
| low_pH_jason_reseq | -3.097 | -1.601 |
| NO_jason_reseq | -2.959 | -0.761 |
| B6_jason_reseq | 0.577 | 1.134 |
| MHCII_jason_reseq | -0.261 | 1.204 |
| Isoniazid02 | 0.403 | 0.316 |
| Rifampicin4 | 0.991 | -0.227 |
| Ethambutol3 | 0.161 | 0.22 |
| Meropenem3 | 1.502 | -0.037 |
| Vancomycin16 | 0.072 | 0.133 |
| Rv2680_day32 | -3.829 | -2.886 |
| H37Rv_KO_MarP | -0.119 | 0.205 |
| hypoxia_3wks | 0.443 | 0.913 |
| hypoxia_6wks | -0.583 | -1.472 |
| glycerol | 2.24 | -0.357 |
| cholesterol | 0.015 | 0.589 |
| AJ | -1.321 | -0.876 |
| Bibs02 | 1.454 | 1.363 |
| Bibs02c | -1.651 | -0.896 |
| BL6 | -3.01 | -3.27 |
| BL6a | -1.092 | -1.007 |
| BXD01 | 0.066 | 0.065 |
| BXD010 | -2.371 | -2.233 |
| BXD011 | -1.793 | -0.684 |
| BXD03 | -0.722 | 0.401 |
| BXD04 | 0.135 | -0.664 |
| BXD05 | -0.628 | 0.491 |
| BXD06 | -0.365 | -0.755 |
| BXD07 | -0.669 | -1.291 |
| BXD08 | -0.437 | -0.569 |
| BXD09 | -0.483 | -0.924 |
| CAST | -1.528 | -1.59 |
| CCcont | -3.444 | -3.755 |
| DS01 | 1.28 | -0.347 |
| DS02 | 0.046 | -0.257 |
| DS04 | 1.435 | -2.312 |
| DS0c | 0.068 | -0.792 |
| GP01 | -2.376 | -1.866 |
| GP02 | -1.774 | -0.007 |
| GP0c | -2.057 | -2.761 |
| NOD | -0.613 | -1.372 |
| NZO | -0.152 | -2.857 |
| PWK | -0.239 | -0.669 |
| H37Rv_KO_CtpC | -0.731 | 0.246 |
| H37Rv_KO_CtpD | -2.199 | -2.209 |
| H37Rv_KO_Rv1272 | -0.777 | -0.905 |
| H37Rv_KO_SugABC | -1.477 | -2.491 |
| H37Rv_KO_MbtN | 0.131 | -0.482 |
| Trans05 | 0.154 | 0.055 |
| macrophage_unactivated | -0.439 | -0.95 |
| IL1 | -1.964 | -0.483 |
| Rapamycin | -1.025 | -0.11 |
| Tcell | -0.336 | -0.935 |
| GMCSF | 2.223 | -1.159 |
| IFNab | 0.608 | -1.732 |
| IFNg | -0.275 | -1.531 |
| IFNg_GMCSF1 | -0.324 | -1.69 |
| Rv1432_day32 | 0.18 | 0.0 |
| Rv1565c_day32 | 0.0 | -0.126 |
| secA2_input | 2.403 | 3.489 |
| delta_Rv3594 | -1.762 | -0.572 |
| delta_Rv3717 | 0.867 | -0.763 |
| delta_Rv3811 | 0.369 | -0.901 |
| delta_Rv0954 | 1.96 | 1.353 |
| PonA1 | 0.808 | -1.062 |
| EccD1_KO | 0.875 | -1.861 |
| EspI_KO | 2.681 | -2.167 |
| PE35_KO | 1.006 | -1.006 |
| PPE68_KO | 0.902 | -1.427 |
| glycerol2 | -0.928 | -0.996 |
| lignocerate | -1.777 | -2.284 |
| oleate | 0.028 | -1.035 |
| phosphatidylcholine | -0.885 | -1.242 |
| acetate | -2.065 | -2.287 |
| glucAc | -4.609 | -3.885 |
| Rv0950ko | 1.11 | -0.112 |
| Rv1096ko | 1.27 | 0.347 |
| Rv3684ko | 0.436 | -1.254 |
| delta_otsA_trehalose | -0.101 | 0.195 |