Top 10 genes with highest correlation to Rv2799/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3500c/yrbE4B | (cc=0.7363) | info on Rv3500c/yrbE4B |
| Rv3501c/yrbE4A | (cc=0.7332) | info on Rv3501c/yrbE4A |
| Rv3499c/mce4A | (cc=0.7173) | info on Rv3499c/mce4A |
| Rv3496c/mce4D | (cc=0.7153) | info on Rv3496c/mce4D |
| Rv3498c/mce4B | (cc=0.7116) | info on Rv3498c/mce4B |
| Rv3494c/mce4F | (cc=0.7112) | info on Rv3494c/mce4F |
| Rv3495c/lprN | (cc=0.7006) | info on Rv3495c/lprN |
| Rv3497c/mce4C | (cc=0.6986) | info on Rv3497c/mce4C |
| Rv3493c/- | (cc=0.6844) | info on Rv3493c/- |
| Rv2047c/- | (cc=0.6518) | info on Rv2047c/- |
Correlation of Rv2799/- with Rv3499c/mce4A
Normalized LFCs for Rv2799/-:
(description and provenance of datasets)
| Rv2799/- | Rv3499c/mce4A | |
| Fe_supp_jason_reseq | 0.696 | -0.054 |
| low_pH_jason_reseq | -0.13 | -0.44 |
| NO_jason_reseq | -0.205 | 0.252 |
| B6_jason_reseq | -0.275 | -1.731 |
| MHCII_jason_reseq | -0.77 | -2.073 |
| Isoniazid02 | -0.745 | -0.116 |
| Rifampicin4 | 0.736 | 0.382 |
| Ethambutol3 | -0.575 | -0.288 |
| Meropenem3 | -1.399 | -0.979 |
| Vancomycin16 | 0.088 | 0.101 |
| Rv2680_day32 | -1.026 | -2.57 |
| H37Rv_KO_MarP | 0.573 | 0.435 |
| hypoxia_3wks | -0.191 | 0.148 |
| hypoxia_6wks | 0.098 | 0.418 |
| glycerol | -1.382 | -0.295 |
| cholesterol | -1.555 | -2.911 |
| AJ | -1.866 | -3.047 |
| Bibs02 | -0.041 | -1.714 |
| Bibs02c | -1.303 | -0.552 |
| BL6 | 0.665 | -0.317 |
| BL6a | -2.253 | -1.032 |
| BXD01 | -0.901 | -0.713 |
| BXD010 | -0.281 | -0.434 |
| BXD011 | -0.223 | -0.446 |
| BXD03 | -0.861 | -1.14 |
| BXD04 | 0.049 | -0.957 |
| BXD05 | -0.654 | -0.426 |
| BXD06 | -1.073 | -0.924 |
| BXD07 | -0.448 | -0.836 |
| BXD08 | -0.379 | -1.444 |
| BXD09 | -1.187 | -0.952 |
| CAST | -1.435 | -1.984 |
| CCcont | 0.76 | 0.171 |
| DS01 | -1.189 | -2.459 |
| DS02 | -1.341 | -1.473 |
| DS04 | -0.62 | -1.897 |
| DS0c | -0.66 | -1.469 |
| GP01 | 0.28 | -0.764 |
| GP02 | -0.444 | -1.116 |
| GP0c | 0.467 | 0.239 |
| NOD | -0.364 | -1.17 |
| NZO | -1.718 | -2.212 |
| PWK | -0.853 | -1.518 |
| H37Rv_KO_CtpC | -1.711 | -0.867 |
| H37Rv_KO_CtpD | -0.482 | -0.487 |
| H37Rv_KO_Rv1272 | 0.12 | 0.802 |
| H37Rv_KO_SugABC | 0.802 | 0.69 |
| H37Rv_KO_MbtN | 0.433 | 0.596 |
| Trans05 | 1.005 | -0.133 |
| macrophage_unactivated | -0.71 | -1.196 |
| IL1 | 1.996 | 2.236 |
| Rapamycin | 2.025 | 2.065 |
| Tcell | 0.378 | -0.323 |
| GMCSF | -0.853 | -1.325 |
| IFNab | -1.131 | -1.496 |
| IFNg | -0.633 | -0.575 |
| IFNg_GMCSF1 | -0.795 | -1.596 |
| Rv1432_day32 | -0.905 | -3.85 |
| Rv1565c_day32 | -0.697 | -2.132 |
| secA2_input | 0.445 | -0.557 |
| delta_Rv3594 | -0.317 | 0.133 |
| delta_Rv3717 | -0.379 | -0.184 |
| delta_Rv3811 | -0.573 | 0.184 |
| delta_Rv0954 | -0.439 | 0.136 |
| PonA1 | 0.419 | -0.169 |
| EccD1_KO | 0.756 | 0.845 |
| EspI_KO | 0.479 | 1.306 |
| PE35_KO | 0.0 | 0.327 |
| PPE68_KO | 0.314 | 0.71 |
| glycerol2 | -0.168 | -0.614 |
| lignocerate | 1.187 | 0.259 |
| oleate | -0.272 | 0.637 |
| phosphatidylcholine | 0.528 | -0.427 |
| acetate | 0.846 | -0.484 |
| glucAc | 0.661 | -0.501 |
| Rv0950ko | 0.401 | 0.115 |
| Rv1096ko | 0.253 | 0.069 |
| Rv3684ko | 0.478 | -0.075 |
| delta_otsA_trehalose | 1.111 | 0.179 |