Top 10 genes with highest correlation to Rv2799/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3500c/yrbE4B | (cc=0.7363) | info on Rv3500c/yrbE4B |
| Rv3501c/yrbE4A | (cc=0.7332) | info on Rv3501c/yrbE4A |
| Rv3499c/mce4A | (cc=0.7173) | info on Rv3499c/mce4A |
| Rv3496c/mce4D | (cc=0.7153) | info on Rv3496c/mce4D |
| Rv3498c/mce4B | (cc=0.7116) | info on Rv3498c/mce4B |
| Rv3494c/mce4F | (cc=0.7112) | info on Rv3494c/mce4F |
| Rv3495c/lprN | (cc=0.7006) | info on Rv3495c/lprN |
| Rv3497c/mce4C | (cc=0.6986) | info on Rv3497c/mce4C |
| Rv3493c/- | (cc=0.6844) | info on Rv3493c/- |
| Rv2047c/- | (cc=0.6518) | info on Rv2047c/- |
Correlation of Rv2799/- with Rv3495c/lprN
Normalized LFCs for Rv2799/-:
(description and provenance of datasets)
| Rv2799/- | Rv3495c/lprN | |
| Fe_supp_jason_reseq | 0.696 | 0.295 |
| low_pH_jason_reseq | -0.13 | 0.304 |
| NO_jason_reseq | -0.205 | 0.538 |
| B6_jason_reseq | -0.275 | -1.572 |
| MHCII_jason_reseq | -0.77 | -2.034 |
| Isoniazid02 | -0.745 | 0.131 |
| Rifampicin4 | 0.736 | 0.764 |
| Ethambutol3 | -0.575 | 0.195 |
| Meropenem3 | -1.399 | -1.224 |
| Vancomycin16 | 0.088 | 0.676 |
| Rv2680_day32 | -1.026 | -2.504 |
| H37Rv_KO_MarP | 0.573 | 0.254 |
| hypoxia_3wks | -0.191 | 0.132 |
| hypoxia_6wks | 0.098 | 0.228 |
| glycerol | -1.382 | -1.343 |
| cholesterol | -1.555 | -4.151 |
| AJ | -1.866 | -3.627 |
| Bibs02 | -0.041 | -0.527 |
| Bibs02c | -1.303 | -1.426 |
| BL6 | 0.665 | -1.169 |
| BL6a | -2.253 | -1.741 |
| BXD01 | -0.901 | -1.162 |
| BXD010 | -0.281 | -1.373 |
| BXD011 | -0.223 | -1.376 |
| BXD03 | -0.861 | -1.553 |
| BXD04 | 0.049 | -1.191 |
| BXD05 | -0.654 | -1.267 |
| BXD06 | -1.073 | -1.2 |
| BXD07 | -0.448 | -1.344 |
| BXD08 | -0.379 | -1.321 |
| BXD09 | -1.187 | -1.677 |
| CAST | -1.435 | -2.604 |
| CCcont | 0.76 | -0.727 |
| DS01 | -1.189 | -3.217 |
| DS02 | -1.341 | -1.727 |
| DS04 | -0.62 | -2.561 |
| DS0c | -0.66 | -1.193 |
| GP01 | 0.28 | -0.207 |
| GP02 | -0.444 | -1.198 |
| GP0c | 0.467 | -0.478 |
| NOD | -0.364 | -2.54 |
| NZO | -1.718 | -1.78 |
| PWK | -0.853 | -1.724 |
| H37Rv_KO_CtpC | -1.711 | -1.837 |
| H37Rv_KO_CtpD | -0.482 | -0.498 |
| H37Rv_KO_Rv1272 | 0.12 | -0.604 |
| H37Rv_KO_SugABC | 0.802 | -0.482 |
| H37Rv_KO_MbtN | 0.433 | 0.073 |
| Trans05 | 1.005 | -0.95 |
| macrophage_unactivated | -0.71 | -0.811 |
| IL1 | 1.996 | 2.462 |
| Rapamycin | 2.025 | 1.921 |
| Tcell | 0.378 | 0.414 |
| GMCSF | -0.853 | -1.901 |
| IFNab | -1.131 | -1.823 |
| IFNg | -0.633 | -1.109 |
| IFNg_GMCSF1 | -0.795 | -2.3 |
| Rv1432_day32 | -0.905 | -2.415 |
| Rv1565c_day32 | -0.697 | -3.192 |
| secA2_input | 0.445 | -0.399 |
| delta_Rv3594 | -0.317 | 0.353 |
| delta_Rv3717 | -0.379 | 0.478 |
| delta_Rv3811 | -0.573 | 0.214 |
| delta_Rv0954 | -0.439 | 0.178 |
| PonA1 | 0.419 | 0.93 |
| EccD1_KO | 0.756 | 0.645 |
| EspI_KO | 0.479 | 0.274 |
| PE35_KO | 0.0 | -0.265 |
| PPE68_KO | 0.314 | 0.406 |
| glycerol2 | -0.168 | -0.43 |
| lignocerate | 1.187 | 0.425 |
| oleate | -0.272 | 1.392 |
| phosphatidylcholine | 0.528 | -0.255 |
| acetate | 0.846 | -0.451 |
| glucAc | 0.661 | -0.519 |
| Rv0950ko | 0.401 | 0.184 |
| Rv1096ko | 0.253 | 1.598 |
| Rv3684ko | 0.478 | 1.094 |
| delta_otsA_trehalose | 1.111 | -1.248 |