TnSeqCorr

Top 10 genes with highest correlation to Rv2712c/-:

update plotcorrelationlink to info on gene
Rv3906c/- (cc=0.5133) info on Rv3906c/-
Rv0325/- (cc=0.506) info on Rv0325/-
Rv2020c/- (cc=0.4764) info on Rv2020c/-
Rv1688/mpg (cc=0.4674) info on Rv1688/mpg
Rv2238c/ahpE (cc=0.4601) info on Rv2238c/ahpE
Rv2629/- (cc=0.4594) info on Rv2629/-
Rv0735/sigL (cc=0.4409) info on Rv0735/sigL
Rv0747/PE_PGRS10 (cc=0.4391) info on Rv0747/PE_PGRS10
Rv1378c/- (cc=0.4338) info on Rv1378c/-
Rv1442/bisC (cc=0.4318) info on Rv1442/bisC

Correlation of Rv2712c/- with Rv3906c/-

Normalized LFCs for Rv2712c/-:
(description and provenance of datasets)
Rv2712c/-Rv3906c/-
Fe_supp_jason_reseq

-0.046

-0.448

low_pH_jason_reseq

0.4

0.478

NO_jason_reseq

0.407

0.814

B6_jason_reseq

-0.54

-0.396

MHCII_jason_reseq

0.617

-0.074

Isoniazid02

1.487

4.598

Rifampicin4

0.157

1.004

Ethambutol3

0.969

1.086

Meropenem3

0.424

0.138

Vancomycin16

0.393

0.409

Rv2680_day32

-0.083

-0.563

H37Rv_KO_MarP

-0.697

0.542

hypoxia_3wks

-0.395

0.068

hypoxia_6wks

0.207

0.677

glycerol

0.619

-0.468

cholesterol

0.377

-0.711

AJ

0.469

-0.198

Bibs02

0.499

-0.658

Bibs02c

-0.482

-0.711

BL6

-0.561

-0.684

BL6a

-0.677

-1.745

BXD01

0.042

-0.66

BXD010

-0.847

-1.201

BXD011

-0.236

-1.039

BXD03

-0.403

-1.191

BXD04

-0.368

0.675

BXD05

-0.132

-0.336

BXD06

-0.136

-0.527

BXD07

-0.231

-0.702

BXD08

-0.171

-0.443

BXD09

-0.144

-0.913

CAST

0.01

0.152

CCcont

-0.553

-0.768

DS01

0.228

0.477

DS02

0.38

0.359

DS04

-0.287

0.765

DS0c

-0.321

-0.085

GP01

-0.631

-0.774

GP02

0.535

-0.098

GP0c

0.077

-0.442

NOD

-0.189

0.334

NZO

0.342

0.65

PWK

0.233

1.114

H37Rv_KO_CtpC

-0.718

-0.131

H37Rv_KO_CtpD

0.462

0.054

H37Rv_KO_Rv1272

-0.499

-0.379

H37Rv_KO_SugABC

0.594

0.291

H37Rv_KO_MbtN

0.382

0.361

Trans05

-0.237

-0.652

macrophage_unactivated

-0.095

-0.562

IL1

0.154

-0.323

Rapamycin

-0.31

1.224

Tcell

-0.225

-0.938

GMCSF

0.378

-0.565

IFNab

0.514

-0.502

IFNg

-0.102

0.027

IFNg_GMCSF1

0.321

0.223

Rv1432_day32

0.094

-0.145

Rv1565c_day32

0.341

0.54

secA2_input

-0.351

-0.49

delta_Rv3594

0.207

-1.423

delta_Rv3717

-0.457

-0.774

delta_Rv3811

-0.055

-0.757

delta_Rv0954

-0.479

-0.942

PonA1

-0.196

0.811

EccD1_KO

0.526

0.23

EspI_KO

0.365

0.0

PE35_KO

-0.551

0.379

PPE68_KO

-0.378

0.09

glycerol2

0.161

0.82

lignocerate

0.622

0.324

oleate

0.736

0.441

phosphatidylcholine

0.655

0.099

acetate

0.336

1.032

glucAc

0.187

-0.191

Rv0950ko

0.214

-0.286

Rv1096ko

0.042

-0.648

Rv3684ko

0.072

0.0

delta_otsA_trehalose

0.576

-0.071