TnSeqCorr

Top 10 genes with highest correlation to Rv2655c/-:

update plotcorrelationlink to info on gene
Rv1239c/corA (cc=0.6824) info on Rv1239c/corA
Rv3419c/gcp (cc=0.6076) info on Rv3419c/gcp
Rv3842c/glpQ1 (cc=0.5671) info on Rv3842c/glpQ1
Rv1712/cmk (cc=0.5487) info on Rv1712/cmk
Rv0668/rpoC (cc=0.5486) info on Rv0668/rpoC
Rv3696c/glpK (cc=0.5405) info on Rv3696c/glpK
Rv0879c/- (cc=0.538) info on Rv0879c/-
Rv3449/mycP4 (cc=0.5269) info on Rv3449/mycP4
Rv0818/- (cc=0.5231) info on Rv0818/-
Rv2167c/- (cc=0.5226) info on Rv2167c/-

Correlation of Rv2655c/- with Rv2167c/-

Normalized LFCs for Rv2655c/-:
(description and provenance of datasets)
Rv2655c/-Rv2167c/-
Fe_supp_jason_reseq

-0.665

-0.235

low_pH_jason_reseq

1.641

-0.423

NO_jason_reseq

1.717

0.213

B6_jason_reseq

0.868

-0.395

MHCII_jason_reseq

-0.526

0.056

Isoniazid02

-0.054

-0.17

Rifampicin4

0.065

0.701

Ethambutol3

1.524

0.447

Meropenem3

0.767

-0.344

Vancomycin16

0.032

-0.294

Rv2680_day32

0.131

0.289

H37Rv_KO_MarP

0.141

-0.196

hypoxia_3wks

-0.901

0.494

hypoxia_6wks

0.409

-0.031

glycerol

-0.268

-0.611

cholesterol

0.171

0.148

AJ

0.647

1.501

Bibs02

0.111

1.264

Bibs02c

-0.135

1.763

BL6

0.28

0.439

BL6a

0.456

1.217

BXD01

0.735

0.778

BXD010

0.791

0.951

BXD011

1.682

0.82

BXD03

0.661

0.844

BXD04

-0.209

0.626

BXD05

0.748

1.094

BXD06

0.772

0.621

BXD07

1.172

0.892

BXD08

1.129

0.529

BXD09

0.781

0.84

CAST

1.3

1.49

CCcont

-0.785

0.285

DS01

0.544

1.134

DS02

0.487

1.045

DS04

-0.364

1.304

DS0c

-0.195

1.31

GP01

0.157

1.294

GP02

0.619

1.392

GP0c

0.216

0.82

NOD

1.217

1.424

NZO

1.062

1.272

PWK

2.322

1.3

H37Rv_KO_CtpC

0.225

0.892

H37Rv_KO_CtpD

-0.651

0.867

H37Rv_KO_Rv1272

0.176

0.537

H37Rv_KO_SugABC

-0.032

0.886

H37Rv_KO_MbtN

0.927

0.664

Trans05

1.608

0.915

macrophage_unactivated

-1.023

-1.155

IL1

-0.486

-0.777

Rapamycin

-0.743

-0.684

Tcell

-0.362

-1.678

GMCSF

-0.349

-0.396

IFNab

-0.732

-1.058

IFNg

-0.184

-0.657

IFNg_GMCSF1

-0.217

-0.921

Rv1432_day32

-0.588

0.189

Rv1565c_day32

-0.607

0.253

secA2_input

1.241

0.188

delta_Rv3594

-0.24

-0.115

delta_Rv3717

0.247

-0.02

delta_Rv3811

0.138

-0.162

delta_Rv0954

-0.548

0.344

PonA1

-0.615

-0.167

EccD1_KO

-0.987

-0.053

EspI_KO

0.145

0.97

PE35_KO

-0.648

0.7

PPE68_KO

0.32

0.493

glycerol2

-1.527

-1.009

lignocerate

-1.803

-0.837

oleate

-0.922

-1.18

phosphatidylcholine

-1.527

-0.919

acetate

-1.765

-0.47

glucAc

-1.717

-0.084

Rv0950ko

-0.178

0.042

Rv1096ko

-0.404

0.151

Rv3684ko

-0.193

-0.635

delta_otsA_trehalose

1.027

0.344