Top 10 genes with highest correlation to Rv2628/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1148c/- | (cc=0.6484) | info on Rv1148c/- |
| Rv3069/- | (cc=0.5602) | info on Rv3069/- |
| Rv2979c/- | (cc=0.5375) | info on Rv2979c/- |
| Rv2306A/- | (cc=0.5344) | info on Rv2306A/- |
| Rv3566c/nat | (cc=0.5101) | info on Rv3566c/nat |
| Rv2010/vapC15 | (cc=0.4979) | info on Rv2010/vapC15 |
| Rv1916/aceAb | (cc=0.4834) | info on Rv1916/aceAb |
| Rv1125/- | (cc=0.4801) | info on Rv1125/- |
| Rv2159c/- | (cc=0.4784) | info on Rv2159c/- |
| Rv2961/- | (cc=0.4702) | info on Rv2961/- |
Correlation of Rv2628/- with Rv3069/-
Normalized LFCs for Rv2628/-:
(description and provenance of datasets)
| Rv2628/- | Rv3069/- | |
| Fe_supp_jason_reseq | -1.787 | -1.525 |
| low_pH_jason_reseq | 0.023 | 1.111 |
| NO_jason_reseq | 1.62 | 1.297 |
| B6_jason_reseq | 1.163 | 0.619 |
| MHCII_jason_reseq | 1.063 | 1.495 |
| Isoniazid02 | -3.054 | -1.008 |
| Rifampicin4 | -1.481 | -0.252 |
| Ethambutol3 | -2.505 | -0.755 |
| Meropenem3 | -2.876 | -0.182 |
| Vancomycin16 | -2.274 | -0.621 |
| Rv2680_day32 | 0.108 | -0.51 |
| H37Rv_KO_MarP | 0.27 | 0.192 |
| hypoxia_3wks | -0.849 | -0.072 |
| hypoxia_6wks | -1.888 | 0.177 |
| glycerol | -0.363 | 0.285 |
| cholesterol | -0.118 | -0.383 |
| AJ | 0.543 | 0.419 |
| Bibs02 | 1.574 | 0.0 |
| Bibs02c | -0.605 | 0.13 |
| BL6 | -0.818 | -0.323 |
| BL6a | -1.606 | -0.181 |
| BXD01 | -1.263 | -0.851 |
| BXD010 | -0.446 | -1.639 |
| BXD011 | -0.744 | -0.678 |
| BXD03 | -0.251 | -1.268 |
| BXD04 | -0.964 | -1.815 |
| BXD05 | -2.024 | -1.323 |
| BXD06 | -0.619 | -0.494 |
| BXD07 | -1.293 | -0.737 |
| BXD08 | -1.87 | -1.247 |
| BXD09 | -1.85 | -1.018 |
| CAST | -0.199 | 0.073 |
| CCcont | -1.891 | -1.539 |
| DS01 | 0.068 | -0.01 |
| DS02 | 0.641 | 0.2 |
| DS04 | -0.55 | 0.129 |
| DS0c | 0.482 | 0.416 |
| GP01 | -1.086 | 1.214 |
| GP02 | 0.595 | 1.65 |
| GP0c | -0.612 | 0.68 |
| NOD | -0.973 | -0.76 |
| NZO | 0.631 | 0.036 |
| PWK | 0.421 | 0.063 |
| H37Rv_KO_CtpC | -0.803 | -0.248 |
| H37Rv_KO_CtpD | -1.584 | -2.98 |
| H37Rv_KO_Rv1272 | -2.273 | -0.39 |
| H37Rv_KO_SugABC | -1.94 | -1.097 |
| H37Rv_KO_MbtN | -2.276 | -1.025 |
| Trans05 | -1.235 | 0.152 |
| macrophage_unactivated | -0.451 | 1.297 |
| IL1 | -0.258 | 1.536 |
| Rapamycin | -2.176 | 0.865 |
| Tcell | -0.228 | 1.87 |
| GMCSF | 2.878 | 0.449 |
| IFNab | -1.17 | 0.729 |
| IFNg | -0.091 | 0.171 |
| IFNg_GMCSF1 | -0.569 | 2.262 |
| Rv1432_day32 | 0.941 | 0.249 |
| Rv1565c_day32 | 0.736 | 1.652 |
| secA2_input | -0.059 | -1.565 |
| delta_Rv3594 | 0.668 | -0.968 |
| delta_Rv3717 | -0.82 | -0.396 |
| delta_Rv3811 | 0.064 | 0.079 |
| delta_Rv0954 | -0.842 | 0.738 |
| PonA1 | -0.753 | 0.299 |
| EccD1_KO | 3.088 | 1.799 |
| EspI_KO | 1.668 | 1.517 |
| PE35_KO | 1.706 | 2.252 |
| PPE68_KO | 2.038 | 1.987 |
| glycerol2 | -0.614 | 0.025 |
| lignocerate | -0.822 | -0.565 |
| oleate | 0.414 | 0.496 |
| phosphatidylcholine | -0.35 | 0.013 |
| acetate | -1.686 | -1.275 |
| glucAc | -1.02 | -1.298 |
| Rv0950ko | 0.271 | -0.274 |
| Rv1096ko | 0.401 | 0.872 |
| Rv3684ko | -0.652 | -1.618 |
| delta_otsA_trehalose | -0.331 | -0.087 |