Top 10 genes with highest correlation to Rv2536/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0174/mce1F | (cc=0.5656) | info on Rv0174/mce1F |
| Rv0169/mce1A | (cc=0.5413) | info on Rv0169/mce1A |
| Rv0176/- | (cc=0.5043) | info on Rv0176/- |
| Rv0173/lprK | (cc=0.5043) | info on Rv0173/lprK |
| Rv1490/- | (cc=0.4993) | info on Rv1490/- |
| Rv0505c/serB1 | (cc=0.4875) | info on Rv0505c/serB1 |
| Rv3421c/- | (cc=0.4865) | info on Rv3421c/- |
| Rv0175/- | (cc=0.4703) | info on Rv0175/- |
| Rv3419c/gcp | (cc=0.4677) | info on Rv3419c/gcp |
| Rv0170/mce1B | (cc=0.4565) | info on Rv0170/mce1B |
Correlation of Rv2536/- with Rv0174/mce1F
Normalized LFCs for Rv2536/-:
(description and provenance of datasets)
| Rv2536/- | Rv0174/mce1F | |
| Fe_supp_jason_reseq | -0.09 | 0.123 |
| low_pH_jason_reseq | -0.166 | 0.231 |
| NO_jason_reseq | 1.147 | 2.058 |
| B6_jason_reseq | -1.389 | -0.149 |
| MHCII_jason_reseq | -1.901 | -1.503 |
| Isoniazid02 | -0.332 | -0.682 |
| Rifampicin4 | 1.776 | 1.801 |
| Ethambutol3 | 0.124 | -0.441 |
| Meropenem3 | 0.998 | 2.802 |
| Vancomycin16 | 2.21 | 1.655 |
| Rv2680_day32 | -0.506 | -0.696 |
| H37Rv_KO_MarP | -1.514 | 0.092 |
| hypoxia_3wks | 0.367 | 2.388 |
| hypoxia_6wks | 0.468 | 2.023 |
| glycerol | 1.393 | 0.484 |
| cholesterol | 0.961 | 1.165 |
| AJ | 0.568 | -0.141 |
| Bibs02 | 0.405 | -2.538 |
| Bibs02c | -1.435 | -2.342 |
| BL6 | 1.279 | -0.162 |
| BL6a | -0.248 | -1.442 |
| BXD01 | 0.627 | 0.688 |
| BXD010 | 0.774 | 0.189 |
| BXD011 | 0.916 | 0.256 |
| BXD03 | 0.966 | 0.243 |
| BXD04 | 2.174 | 0.084 |
| BXD05 | 1.31 | 0.114 |
| BXD06 | 1.043 | 0.029 |
| BXD07 | 1.114 | 0.131 |
| BXD08 | 0.416 | -0.301 |
| BXD09 | 0.786 | 0.101 |
| CAST | -0.165 | -1.418 |
| CCcont | 0.5 | -0.283 |
| DS01 | -0.245 | -2.618 |
| DS02 | 0.124 | -1.785 |
| DS04 | 0.038 | -1.261 |
| DS0c | -1.18 | -2.062 |
| GP01 | -0.818 | -1.084 |
| GP02 | -1.542 | -1.896 |
| GP0c | -0.507 | -1.121 |
| NOD | 1.217 | -0.137 |
| NZO | 0.152 | 0.881 |
| PWK | -0.793 | -1.208 |
| H37Rv_KO_CtpC | 0.667 | -0.224 |
| H37Rv_KO_CtpD | 0.708 | 0.359 |
| H37Rv_KO_Rv1272 | 1.673 | -0.489 |
| H37Rv_KO_SugABC | 2.392 | 1.426 |
| H37Rv_KO_MbtN | 1.121 | 0.723 |
| Trans05 | 0.984 | 0.137 |
| macrophage_unactivated | -1.6 | -1.285 |
| IL1 | -0.789 | -1.504 |
| Rapamycin | -0.577 | -1.626 |
| Tcell | -0.707 | -1.577 |
| GMCSF | -1.009 | -0.24 |
| IFNab | -1.427 | 0.26 |
| IFNg | -0.136 | 0.208 |
| IFNg_GMCSF1 | -0.5 | 0.05 |
| Rv1432_day32 | -0.875 | -0.84 |
| Rv1565c_day32 | -0.534 | -1.526 |
| secA2_input | -0.542 | -0.941 |
| delta_Rv3594 | 0.668 | 0.6 |
| delta_Rv3717 | 0.773 | 0.722 |
| delta_Rv3811 | 0.0 | 0.845 |
| delta_Rv0954 | 0.266 | 0.407 |
| PonA1 | 1.278 | 0.537 |
| EccD1_KO | 0.171 | -0.385 |
| EspI_KO | 0.026 | 0.137 |
| PE35_KO | 0.578 | -0.37 |
| PPE68_KO | 0.608 | -0.442 |
| glycerol2 | -1.094 | -0.31 |
| lignocerate | -0.268 | -2.717 |
| oleate | 0.299 | 0.88 |
| phosphatidylcholine | 0.773 | -0.868 |
| acetate | 0.249 | 0.083 |
| glucAc | 0.462 | -0.119 |
| Rv0950ko | 0.461 | 0.356 |
| Rv1096ko | 0.335 | 0.1 |
| Rv3684ko | 0.124 | 0.763 |
| delta_otsA_trehalose | -0.014 | 0.168 |